View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3806_high_19 (Length: 315)

Name: NF3806_high_19
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3806_high_19
NF3806_high_19
[»] chr1 (2 HSPs)
chr1 (5-309)||(17442248-17442553)
chr1 (147-291)||(21545519-21545660)
[»] chr5 (2 HSPs)
chr5 (185-289)||(21943409-21943513)
chr5 (195-242)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (147-242)||(5882036-5882131)
chr7 (185-234)||(8040290-8040339)
chr7 (254-289)||(24578430-24578465)
chr7 (184-229)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (159-224)||(7504292-7504357)
chr4 (249-293)||(3797331-3797375)
chr4 (249-293)||(4216456-4216500)
[»] chr8 (1 HSPs)
chr8 (81-118)||(11154408-11154445)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 17442248 - 17442553
Alignment:
Q  5 ccaatttagtaacgcaatgatgaattggctattatggt---gtttcttaagcgtcctactttttgtttctttctaaaatataccatttgatcggattata 101  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17442248 ccaatttagtaacgcaatgatgaattggctattatggtggtgtttcttaagcgtcctactttttgtttctttctaaaatatactatttgatcggattata 17442347  T
Q  102 taatctgaaccatgtttttgttatataataagaattgttttggaattcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcat 201  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17442348 taatatgaaccatgtttttgttatataataaaaattgttttagaattcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaattttttat 17442447  T
Q  202 tatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttctactaatccactcaaggcc 301  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  17442448 tatataaaataatataaaagacattgagcttatgattata--tcactaaatcattatatagttgttaatgatatacatttctactaacccgcttaaggcc 17442545  T
Q  302 tatgctac 309  Q
    | ||||||    
T  17442546 tgtgctac 17442553  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 21545660 - 21545519
Alignment:
Q  147 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctca 246  Q
    |||||||||||||||| | ||||||| ||||| ||   ||||||||| |||||||| |||||| ||||||||||||||  |||||||| ||||||||  |    
T  21545660 ttcaacaaactgcttgcactaatttcatgtctctgtggattcaacaaattttcattgtataaa-taatataaaagacaacgagcttataattatatcaaa 21545562  T
Q  247 ctaaatcattatatagttgttaatgatatacatttctactaatcc 291  Q
     ||  ||||||| ||||||||||||||||||||||| ||||||||    
T  21545561 ata--tcattatgtagttgttaatgatatacatttcaactaatcc 21545519  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 21943513 - 21943409
Alignment:
Q  185 attcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttcta 284  Q
    ||||||||| |||| |||||||||||||||||||||||||  ||| |||| |||||||   |  ||||||| ||||| |||||||| ||||||||||| |    
T  21943513 attcaacaaatttttattatataaaataatataaaagacaacgagtttataattatattaaaaaaaatcataatatatttgttaataatatacatttcaa 21943414  T
Q  285 ctaat 289  Q
    |||||    
T  21943413 ctaat 21943409  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 20117168 - 20117121
Alignment:
Q  195 ttttcattatataaaataatataaaagacattgagcttatgattatat 242  Q
    |||||| ||||||||||||||||||||| |||||| |||| |||||||    
T  20117168 ttttcaatatataaaataatataaaagagattgaggttataattatat 20117121  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 5882036 - 5882131
Alignment:
Q  147 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat 242  Q
    ||||||| |||||||| | | ||||| | ||||||   ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| |||||||    
T  5882036 ttcaacatactgcttgcactgatttcatatctttgtggattcaacaaattttcattatacaaaataatacaaaagacaatgagcatataattatat 5882131  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 8040339 - 8040290
Alignment:
Q  185 attcaacaatttttcattatataaaataatataaaagacattgagcttat 234  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  8040339 attcaacaatttttaaatatgtaaaataatataaaagacaatgagcttat 8040290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 24578430 - 24578465
Alignment:
Q  254 attatatagttgttaatgatatacatttctactaat 289  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24578430 attatatagttgttaatgatatacatttcaactaat 24578465  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 42575279 - 42575233
Alignment:
Q  184 tattcaacaatttttcatta-tataaaataatataaaagacattgag 229  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  42575279 tattcaacaatttttcaataatataaaataatataaaagacaatgag 42575233  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 7504292 - 7504357
Alignment:
Q  159 cttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagaca 224  Q
    |||||||| ||||| ||||||||   ||| ||||| |||||||||||||||||| |||||||||||    
T  7504292 cttgaaatgatttcatgtctttgtggatttaacaaattttcattatataaaatagtataaaagaca 7504357  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 3797375 - 3797331
Alignment:
Q  249 aaatcattatatagttgttaatgatatacatttctactaatccac 293  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  3797375 aaatcattatgtagttgttaacaatatacatttcaactaatccac 3797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 4216500 - 4216456
Alignment:
Q  249 aaatcattatatagttgttaatgatatacatttctactaatccac 293  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  4216500 aaatcattatgtagttgttaacaatatacatttcaactaatccac 4216456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 11154445 - 11154408
Alignment:
Q  81 ataccatttgatcggattatataatctgaaccatgttt 118  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  11154445 ataccatttgctcggattatagaatctgaaccatgttt 11154408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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