View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3806_high_2 (Length: 674)

Name: NF3806_high_2
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3806_high_2
NF3806_high_2
[»] chr6 (13 HSPs)
chr6 (7-372)||(4261231-4261610)
chr6 (368-559)||(4261638-4261836)
chr6 (134-330)||(4037729-4037940)
chr6 (535-619)||(24273707-24273790)
chr6 (237-278)||(4027475-4027516)
chr6 (144-209)||(4027537-4027602)
chr6 (332-372)||(4268392-4268432)
chr6 (157-199)||(4268221-4268263)
chr6 (330-372)||(4276819-4276861)
chr6 (538-614)||(4036478-4036554)
chr6 (237-276)||(4268308-4268347)
chr6 (337-370)||(4263019-4263052)
chr6 (332-372)||(4037673-4037713)
[»] chr5 (6 HSPs)
chr5 (71-198)||(24052702-24052829)
chr5 (71-198)||(24049566-24049693)
chr5 (242-333)||(24101913-24102009)
chr5 (555-619)||(24091025-24091089)
chr5 (332-372)||(24091661-24091701)
chr5 (262-290)||(24091725-24091753)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 372
Target Start/End: Original strand, 4261231 - 4261610
Alignment:
Q  7 cttagaactgtgtatgcttaggcctccaccttgtttcttgctttgagatcaacatcagcaatcagcatatcagaagtaaatgagattggttgaatgagtc 106  Q
    ||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||   ||||||||||||    
T  4261231 cttagaactgtttatgcttaggccttcaccttgtttcttcctttcagatcaacatcagcaatcagcatatcagcagtaaatgagaacagttgaatgagtc 4261330  T
Q  107 aatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgt 206  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4261331 aatctgcacaaatgaccaaataaaaaagcatatgatcttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgt 4261430  T
Q  207 taagacaatactttatatctgttaatagtaaaa--------------acaacaagaatggcctaaacctatgggctattagcaggaaatagactgcttaa 292  Q
    |||||||||||||||||||||||| ||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4261431 taagacaatactttatatctgttattagtaaaaacaactaagtaaagacaacaagaatggcctaaacctatgggctattagcaggaaatagactgcttaa 4261530  T
Q  293 ctagctacagttcatgtttggtttatactttgtataaactaaacttgttggcactttatagatttattctagggaaaaga 372  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4261531 ctagctacatttcatgtttggtttacacttggtataaactaaacttgttggcactttatagatttattctagggaaaaga 4261610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 368 - 559
Target Start/End: Original strand, 4261638 - 4261836
Alignment:
Q  368 aaagattcttgctactgctgctcatattcacataaacctagagaagaatacatccattgtatacattaattttataacagtcattttgtagttgaagaca 467  Q
    |||||||||||||||||||   |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4261638 aaagattcttgctactgct---catattcacataaacctagagaa---tacatccattgtatacattaattttataacagtcattttgtagttgaagaca 4261731  T
Q  468 tagacacaatcgatcaaacttcgtgatc--------------aattatttgcgtttatttatctgttttccttagagtgctttattttctaatagattaa 553  Q
    ||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4261732 tagacacaatcgatcaaacttcgtgatcaatcatgagtttttaattatttgcgtttatttatctgttttccttagagtgc-ttattttctaatagattaa 4261830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 134 - 330
Target Start/End: Complemental strand, 4037940 - 4037729
Alignment:
Q  134 gcatatgatcttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaagaca--atactttatatctgttaa 231  Q
    ||||||||||||||||||||||||| ||||||||| ||  |||| |||| ||| |||| | ||||  |||||||||||||  ||||| |||||||||||     
T  4037940 gcatatgatcttttatgatctactcatattctattattgcttgttattttgtcaaaggtaccaaaggagatgttaagacacaatactatatatctgttat 4037841  T
Q  232 tagtaaa------------aacaacaagaatggcctaaa-cctatgggctattagcaggaaatagactgcttaactagctacagttcatgtttggtttat 318  Q
    | |||||            |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| || ||| || ||||| || |    
T  4037840 tggtaaagacaacaagtaaaacaacaagaatggcctaaaacctatgggctattggcaggaactagactgcttaactagcaacggttgatatttggatttt 4037741  T
Q  319 actttgtataaa 330  Q
    || |||||||||    
T  4037740 accttgtataaa 4037729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 24273707 - 24273790
Alignment:
Q  535 ttattttctaatagattaaagatatagcaaggtcttagcaatgatctcaaccttggttaatgtaactgaaactcttaaatactta 619  Q
    ||||||||||||||||| ||||||||  ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  24273707 ttattttctaatagattgaagatatat-aaggtctaagcaatgatctccaccttggttaatgtaattgaaactcttaaatactta 24273790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 4027516 - 4027475
Alignment:
Q  237 aaaacaacaagaatggcctaaacctatgggctattagcagga 278  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  4027516 aaaacaacaaaaatggcctaaacctatgggctattagcagga 4027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 4027602 - 4027537
Alignment:
Q  144 ttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaa 209  Q
    |||||||| |||||||||||||||| || | |||||||| |||||||||||||||  |||||||||    
T  4027602 ttttatgaactactcttattctatttttgtctgtcattttgtccaaggcatcaaagtagatgttaa 4027537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 4268392 - 4268432
Alignment:
Q  332 taaacttgttggcactttatagatttattctagggaaaaga 372  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  4268392 taaacttgttggcactttatagatttattttagggaaaaga 4268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 4268221 - 4268263
Alignment:
Q  157 tcttattctattcttctttgtcatttggtccaaggcatcaaaa 199  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  4268221 tcttattctattcttgtttgtcatttgatccaaggcatcaaaa 4268263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 4276819 - 4276861
Alignment:
Q  330 actaaacttgttggcactttatagatttattctagggaaaaga 372  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  4276819 actaaacttgttggcactttatacatttattctagggtaaaga 4276861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 614
Target Start/End: Complemental strand, 4036554 - 4036478
Alignment:
Q  538 ttttctaatagattaaagatatagcaaggtcttagcaatgatctcaaccttggttaatgtaactgaaactcttaaat 614  Q
    |||||| ||||||| ||||||||| ||||  | ||||||||| ||||  ||||||||||||| |||| |||||||||    
T  4036554 ttttctgatagattgaagatatagtaaggaataagcaatgatttcaagtttggttaatgtaattgaagctcttaaat 4036478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 4268308 - 4268347
Alignment:
Q  237 aaaacaacaagaatggcctaaacctatgggctattagcag 276  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  4268308 aaaacaacaagaatggcttaaaactatgggctattagcag 4268347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 4263019 - 4263052
Alignment:
Q  337 ttgttggcactttatagatttattctagggaaaa 370  Q
    |||||||||||||||||||||| |||||||||||    
T  4263019 ttgttggcactttatagatttactctagggaaaa 4263052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 4037713 - 4037673
Alignment:
Q  332 taaacttgttggcactttatagatttattctagggaaaaga 372  Q
    |||||||||||||||||| |||||||| ||| |||||||||    
T  4037713 taaacttgttggcactttgtagatttactcttgggaaaaga 4037673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 24052829 - 24052702
Alignment:
Q  71 gcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattct 170  Q
    |||||||||||||||||||||  |||||||||||||| |||  |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||    
T  24052829 gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatct 24052730  T
Q  171 tctttgtcatttggtccaaggcatcaaa 198  Q
    | |||| |||||||||||||||||||||    
T  24052729 tgtttgacatttggtccaaggcatcaaa 24052702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 24049693 - 24049566
Alignment:
Q  71 gcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattct 170  Q
    |||||||||||||||||||||  |||||||||||||| |||  |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||    
T  24049693 gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatct 24049594  T
Q  171 tctttgtcatttggtccaaggcatcaaa 198  Q
    | ||||  ||||||||||||||||||||    
T  24049593 tgtttgatatttggtccaaggcatcaaa 24049566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 24102009 - 24101913
Alignment:
Q  242 aacaagaatggcctaaa-cctatgggctat----tagcaggaaatagactgcttaactagctacagttcatgtttggtttatactttgtataaacta 333  Q
    ||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24102009 aacaagaatggcctaaaacctatgggctatatattagcaggaaatagactgcttaactagctacagttcatgtttggattataccttgtataaacta 24101913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 619
Target Start/End: Complemental strand, 24091089 - 24091025
Alignment:
Q  555 gatatagcaaggtcttagcaatgatctcaaccttggttaatgtaactgaaactcttaaatactta 619  Q
    ||||||| ||||| | ||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  24091089 gatatagtaaggtataagcaatgatctcaacattggttaatgtaattgaagctcttaaatactta 24091025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 24091701 - 24091661
Alignment:
Q  332 taaacttgttggcactttatagatttattctagggaaaaga 372  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  24091701 taaacttgttggcactttatatatttattatagggaaaaga 24091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 24091753 - 24091725
Alignment:
Q  262 atgggctattagcaggaaatagactgctt 290  Q
    |||||||||||||||||||||||||||||    
T  24091753 atgggctattagcaggaaatagactgctt 24091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University