View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_high_4 (Length: 595)
Name: NF3806_high_4
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_high_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 189 - 595
Target Start/End: Complemental strand, 41089689 - 41089283
Alignment:
| Q |
189 |
gtagcaagcaatagcatggtattttatttagaaatagtagttatgataagctccatgcatagatccatcaaaccaaatcagatgacttaaaaacttgcaa |
288 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
41089689 |
gtagctagcaatagcatggtgttttatttagaaatagtagttatgataagctccatgcatagatccatcaaaccaaatcagatgacttaaaagctagcaa |
41089590 |
T |
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| Q |
289 |
tattatctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagaccatgaatgtaggtggtgtagttgacgggtcgtatttagcgtggcagcaga |
388 |
Q |
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| T |
41089589 |
tattgtctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagaccatgcatggaggtggtgtagttgacgggcacctgttgttgtagcagcaga |
41089490 |
T |
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| Q |
389 |
aaaaccaatcctcaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacattcaat |
488 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41089489 |
aaaaccaatccttaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacattcaat |
41089390 |
T |
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| Q |
489 |
gtcttagagagattgtcataggagatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaatgagttgacatcaa |
588 |
Q |
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| T |
41089389 |
gtcttagagagattgtcataggagatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaatgagttgacatcaa |
41089290 |
T |
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| Q |
589 |
ttccaac |
595 |
Q |
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| T |
41089289 |
ttccaac |
41089283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 385 - 574
Target Start/End: Complemental strand, 41074393 - 41074204
Alignment:
| Q |
385 |
cagaaaaaccaatcctcaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacatt |
484 |
Q |
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||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41074393 |
cagaaaaaccaatcctcactgtgtccggaagcactgctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaatcacatt |
41074294 |
T |
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| Q |
485 |
caatgtcttagagagattgtcataggagatatttacatcgaccaaggcaccactaactctattccatttcactgtctttaaagaaatcaa |
574 |
Q |
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| T |
41074293 |
caatgtcttagagagactgtcataggagatatttacatcgaccaaggcgccactcactctattccatttcactgtccttaaagaaatcaa |
41074204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 41089873 - 41089745
Alignment:
| Q |
11 |
catagggtgtaacaacaatcatagttcaattttcaaccatcgatccagctaattgaaaaattgattaataaaaatattgaagtacccttaactcaaacac |
110 |
Q |
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| T |
41089873 |
catagggtgtaacaacaatcataattcaattttcaaccatcgatccaactaattgaaaaattgattaataaaaatattgaagtacccttaactcaaacac |
41089774 |
T |
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| Q |
111 |
aggttcaatcatggtctttatttagaagg |
139 |
Q |
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| T |
41089773 |
aggttcaatcacggtctttatttagaagg |
41089745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 41074541 - 41074431
Alignment:
| Q |
255 |
atcaaaccaaatcagatgacttaaaaacttgcaatattatctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagaccatgaatgtaggtggt |
354 |
Q |
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| T |
41074541 |
atcaaaccaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtggccaagtttgacttgaaagaccatgaatggatgtatt |
41074442 |
T |
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| Q |
355 |
gtagttgacgg |
365 |
Q |
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| T |
41074441 |
gtagttgacgg |
41074431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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