View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_high_6 (Length: 517)
Name: NF3806_high_6
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 55505391 - 55505890
Alignment:
| Q |
1 |
atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgctctaaaagtacttagctatgaagtgtaagatgtttttgttttcggat |
100 |
Q |
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| T |
55505391 |
atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgctctaaaagtacttagctatgaagtgtaagatgtttttgttttcggat |
55505490 |
T |
|
| Q |
101 |
ctatttccatgagaannnnnnnnn-aaataaaaaattatcatagaatcgtatatttaaaactatccgcatatacaacacttttgtcctttgaatgtgcat |
199 |
Q |
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| T |
55505491 |
ctatttccatgagaattttttttttaaataaaaaattatcatagaatcgtatatttaaaactatccgcatatacaacgcttttgtcctttgaatgtgcat |
55505590 |
T |
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| Q |
200 |
caaacatattacaatatggatgcttacacatattatgttccgttggtttaaactcataataattgcaatgataatccataaattatgagggttcagatcc |
299 |
Q |
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| T |
55505591 |
caaacatattacaatatggatgcttacacatattatgttccgttggtttaaactcataataattgcaatgataatccataaattatgagggttcagatcc |
55505690 |
T |
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| Q |
300 |
tctccttttccttgtggggagatgaaggtatcatgtttggagacaaaactacatgttctactgtacttggattcatcatttctagtgcaagggttttaaa |
399 |
Q |
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| T |
55505691 |
tctccttttccttgtggggagatgaaggtatcatgtttggagacaaaactacatgttctagtgtacttggattcatcatttctagtgcaagggttttaaa |
55505790 |
T |
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| Q |
400 |
atcatgtcttactctctttgaatgttacaatgtcttgttgctaaagaaaatgggaggatccaagttttctccgttccatctttgatctttcttgtagaga |
499 |
Q |
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| T |
55505791 |
atcatgtcttactctctttgaatgttacaatgtcttgttgctaaagaaaatgggaggatccaagttttctccgttccatctttgatctttcttgtagaga |
55505890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 204 - 382
Target Start/End: Original strand, 43995858 - 43996037
Alignment:
| Q |
204 |
catattacaatatggatgcttacacatattatgtt-ccgttggtttaaactcataataattgcaatgataatccataaattatgagggttcagatcctct |
302 |
Q |
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| T |
43995858 |
catattacaatatggatgcctacacatattatgtttccgttggtttaaactcataataattgcattgataatccatagattatgagggtttggatcctct |
43995957 |
T |
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| Q |
303 |
ccttttccttgtggggagatgaaggtatcatgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
382 |
Q |
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| T |
43995958 |
ccttttccttgtggggagatgaaggtatcatgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
43996037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 43633961 - 43633890
Alignment:
| Q |
311 |
ttgtggggagatgaaggtatcatgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
382 |
Q |
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| T |
43633961 |
ttgtggggagatgaaggtatcatgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
43633890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43634010 - 43633964
Alignment:
| Q |
1 |
atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcatt |
47 |
Q |
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| T |
43634010 |
atttgagtgacaaaaagaagaaactcttcttgcatcaaggatgcatt |
43633964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 43995816 - 43995862
Alignment:
| Q |
125 |
aaataaaaaattatcatagaatcgtatatttaaaactatccgcatat |
171 |
Q |
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| T |
43995816 |
aaataaaaaatcatcatacaatcgtatatttaaaactatccgcatat |
43995862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9580893 - 9580840
Alignment:
| Q |
1 |
atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct |
54 |
Q |
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| T |
9580893 |
atttgagtgacagaaagaagaaaatcttctcgtgtcaaggatgcattgtttgct |
9580840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9586475 - 9586422
Alignment:
| Q |
1 |
atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct |
54 |
Q |
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| T |
9586475 |
atttgagtgacagaaagaagaaacccttctcgtgtcaaggatgcattgtttgct |
9586422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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