View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_high_8 (Length: 458)
Name: NF3806_high_8
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 1743708 - 1743283
Alignment:
| Q |
15 |
tcatcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatg |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743708 |
tcatcaaatttcacaatctgggttggaccttgatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatg |
1743609 |
T |
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| Q |
115 |
ataaacttgagggttttgatttgctcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgata |
214 |
Q |
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|||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
1743608 |
ataaacttgagggttttgatttgctcgaacgttggatctcttcgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgaca |
1743509 |
T |
|
| Q |
215 |
ttagctttcctttggattctcaagcatctgattttggattactaaggctatcttccatgcttgagaatctgcgcaggatcgatctttccggtaatcactt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
1743508 |
ttagctttcctttggattctcaagcatctgattttggattactaaggctgtcttccatgcttgagaatctgtgcaagatcgatctttctggtaatcactt |
1743409 |
T |
|
| Q |
315 |
gataactgataaatcacttttgtctctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgct |
414 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
1743408 |
gatcactgataaatctcttttgtctctatgccagaactgcagatcattggaagaaatttcattcttccaatgcttcaagatatcccaagatggaattgct |
1743309 |
T |
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| Q |
415 |
tttgctatccgaatgaggccaagttt |
440 |
Q |
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| T |
1743308 |
tctgctatccgaatgaggccaagttt |
1743283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 440
Target Start/End: Original strand, 2006674 - 2007099
Alignment:
| Q |
15 |
tcatcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatg |
114 |
Q |
| |
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||||||| |||||||||||||| ||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
2006674 |
tcatcaagtttcacaatctgggctggaccttgatttcgttaatctttccaaccagagaacagttcctgttgatggattgcgagagctcggttcaaagatg |
2006773 |
T |
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| Q |
115 |
ataaacttgagggttttgatttgctcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgata |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
2006774 |
ataaacctgagggttttgatttgctcaaacattggctctctttgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgaca |
2006873 |
T |
|
| Q |
215 |
ttagctttcctttggattctcaagcatctgattttggattactaaggctatcttccatgcttgagaatctgcgcaggatcgatctttccggtaatcactt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| || |||||||| ||||||||||| |
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| T |
2006874 |
ttagctttcctttggattctcaagcatctgattttggattaataaggtaatcttccatgctcgagaatctgcgcaaaattgatctttctggtaatcactt |
2006973 |
T |
|
| Q |
315 |
gataactgataaatcacttttgtctctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgct |
414 |
Q |
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| || |||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
2006974 |
aaccaccgataaatcccttttgtctctatgccagaactgtagatcactggaagaaattttattcttccaatgtttcaaaatatcccaagttggaattgct |
2007073 |
T |
|
| Q |
415 |
tttgctatccgaatgaggccaagttt |
440 |
Q |
| |
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| ||| |||||||||| ||||||||| |
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| T |
2007074 |
tctgcgatccgaatgatgccaagttt |
2007099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 1749055 - 1749015
Alignment:
| Q |
60 |
ttccaaccaaagaacacttcctgttgatggattgcgagaac |
100 |
Q |
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||||||||| ||||||||||| |||||||||||||||||| |
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| T |
1749055 |
ttccaaccagagaacacttccccttgatggattgcgagaac |
1749015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 44577567 - 44577603
Alignment:
| Q |
15 |
tcatcaaatttcacaatctgggttggacctagatttg |
51 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||| |
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| T |
44577567 |
tcatcaaatttcacaaactgggttggaccttgatttg |
44577603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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