View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_12 (Length: 393)
Name: NF3806_low_12
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 40351502 - 40351138
Alignment:
| Q |
11 |
cacagatttaacagacattagttatcagcgaaaagaagagatattaatatctgttgactgagttgtatgcatatcaactgatagtctttt-gtaacnnnn |
109 |
Q |
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| T |
40351502 |
cacagatttaacagacattagttatcagcgaaaagaagagatattaatatctgttgactgagttgtatgcatatcaactgatagtctttttgtaacaaaa |
40351403 |
T |
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| Q |
110 |
nnntatactatttaaggaaagggaaacttgcagtctcttcgcatccttgaagattgaagatcgcaatttcaaaattttacatcaaatagcaccacaaggg |
209 |
Q |
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| T |
40351402 |
aaatatactatttaaggaaagggaaacttgcagtctcttcgcatccttgaagattgaagatcgcaagttcaaaattttacatcaaataacaccacaaggg |
40351303 |
T |
|
| Q |
210 |
gaaaaacatttatagtgtgaataacttctttagtatagctacattaagtaagaagtcaccttcctctttacactacaatcaagaagagagacacaactta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40351302 |
gaaaaacatttatagtgtgaataacttctttagtatagctacattaagtaagaagtcaccttcctctttacactacaatcaagaagagagacacaactta |
40351203 |
T |
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| Q |
310 |
taaagtgcaacacacacacaataagataaaacagaaatacatctaatgaatgaccctgtccatca |
374 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40351202 |
taaagtgcaacacacacacaataagataaaacagcaatacatctaatgaatgaccctgtccatca |
40351138 |
T |
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