View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_13 (Length: 364)
Name: NF3806_low_13
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 36761381 - 36761047
Alignment:
| Q |
13 |
aaaatgtcaaattaaaactagaactaacctag-cccccctcctccacttgagatcaggcagggatgcaaggttgggtcaaagggtcggctgacgagactt |
111 |
Q |
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| T |
36761381 |
aaaatgtcaaattaaaactagaactaacctagtcccccctcctccacttgagatcaggcagggatgcaaggtcggatcagagggtcggctgacgagactt |
36761282 |
T |
|
| Q |
112 |
acttattgtattttttaataaatacttaaatgtttatgcaatgtgaccccacttatataatacttttgttttcaacatgcaccacttcaacaactatgca |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36761281 |
acttattgtattttttaataaatacttagatgtttatgcaatgtgaccccacttatataatacttttgttttcaacatgcaccacttcaacaactatgca |
36761182 |
T |
|
| Q |
212 |
ttcaacgtgttcatacatatgttcaaattgaacatcatcaacataccattatattattttggttgtgtaattgtcaatacaatagaca--nnnnnnnnna |
309 |
Q |
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| T |
36761181 |
ttcaacatgttcatacatatgttcaacttgaacatcatcaacataccattatattattttggttgtgtaattgtcaatacaatagacattttttttttta |
36761082 |
T |
|
| Q |
310 |
aatgatcaataccaaaaacagtgtatagtgcatat |
344 |
Q |
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| T |
36761081 |
aatgatcaataccaaaaacagtgtatagtgcatat |
36761047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 43129811 - 43129857
Alignment:
| Q |
123 |
tttttaataaatacttaaatgtttatgcaatgtgaccccacttatat |
169 |
Q |
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| T |
43129811 |
tttttaaccaatacttaaatatttatgcaatgtgaccccacttatat |
43129857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 37206859 - 37206823
Alignment:
| Q |
122 |
ttttttaataaatacttaaatgtttatgcaatgtgac |
158 |
Q |
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||||||||||||||||||||| ||||||||| ||||| |
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| T |
37206859 |
ttttttaataaatacttaaatatttatgcaacgtgac |
37206823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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