View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_15 (Length: 348)
Name: NF3806_low_15
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 183 - 346
Target Start/End: Complemental strand, 2635748 - 2635585
Alignment:
| Q |
183 |
cacaatacctcatctggtaggaatcatgccagttttcctagcataagcaaagatcccaccagcctcaatcactggaccagcatccccaatcggcttcaac |
282 |
Q |
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| T |
2635748 |
cacaatacctcatctggtaggaatcatgccagttttcctagcataagcaaagatcccaccagcctcaatcactggaccagcatccccaatcggcttcaac |
2635649 |
T |
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| Q |
283 |
tgatactcctttccagtcgtatgattaatcaaccgattctcctgtagctcgaccgtcaccacat |
346 |
Q |
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| T |
2635648 |
tgatactcctttccagtcgtatgattaatcaaccgattctcctcaagctcgaccgtcaccacat |
2635585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 2635919 - 2635779
Alignment:
| Q |
11 |
catcatcatggtacataactcattttgattcaatcatgtctatcttcatctttccatgtacttattaatatctattttccataacgttttcaattttcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2635919 |
catcatcatggtacataactcattttgattcaatcatgtctatcttcatctttccatgtacttattaatatctattttccataacgttttcaattttcac |
2635820 |
T |
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| Q |
111 |
acatcttccctaatttttcctacaccgttctatcaaacaatt |
152 |
Q |
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| T |
2635819 |
acatcttccctaa-ttttcctacaccgttctatcaaacaatt |
2635779 |
T |
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