View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_17 (Length: 337)
Name: NF3806_low_17
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 295349 - 295035
Alignment:
| Q |
20 |
aattgtagtttgaacttggaacgaatgaatgaatgagcatcatatcatatcata-----acaatatggcttctttgctccatccaactccaactgttacc |
114 |
Q |
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| T |
295349 |
aattgtagtttgaacttggaacgaatgaatgaatgagcatcatatcatatcatatcataacaatatggcttctttgctccatccaactccaactgttacc |
295250 |
T |
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| Q |
115 |
actatacttaagcatcgaacatcaacaatctgtttcttctgtcccttaaaacctacaaatgtttctttcttaactaacacaaaccgtgtcaataccaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295249 |
actatacttaagcatcgaacatcaacaatctgtttcttctgtcccttaaaacctacaaatgtttctttcttaactaacacaaaccgtgtcaataccaaca |
295150 |
T |
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| Q |
215 |
ctacaaagtgtaatgcattttttgataataatgtcaccagtggtttgttggaggttggtgggggccacattccttctttccttcgatcaggactacttca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
295149 |
ctacaaagtgtaatgcattttttgataataatgtcaccagtggtttgttggaggttggtggggaccacattccttctttccttcgatcaggactacttca |
295050 |
T |
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| Q |
315 |
gtttcaagaattatc |
329 |
Q |
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||||||||||||||| |
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| T |
295049 |
gtttcaagaattatc |
295035 |
T |
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