View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_18 (Length: 335)
Name: NF3806_low_18
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 1743577 - 1743283
Alignment:
| Q |
23 |
ttggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgatattagctttcctttggattctcaagcatctga |
122 |
Q |
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| T |
1743577 |
ttggatctcttcgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgacattagctttcctttggattctcaagcatctga |
1743478 |
T |
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| Q |
123 |
ttttggattactaaggctatcttccatgcttgagaatctgcgcaggatcgatctttccggtaatcacttgataactgataaatcacttttgtctctatgc |
222 |
Q |
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| T |
1743477 |
ttttggattactaaggctgtcttccatgcttgagaatctgtgcaagatcgatctttctggtaatcacttgatcactgataaatctcttttgtctctatgc |
1743378 |
T |
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| Q |
223 |
cagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagttt |
317 |
Q |
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| T |
1743377 |
cagaactgcagatcattggaagaaatttcattcttccaatgcttcaagatatcccaagatggaattgcttctgctatccgaatgaggccaagttt |
1743283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 2006798 - 2007099
Alignment:
| Q |
16 |
tcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgatattagctttcctttggattctcaag |
115 |
Q |
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| T |
2006798 |
tcaaacattggctctctttgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgacattagctttcctttggattctcaag |
2006897 |
T |
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| Q |
116 |
catctgattttggattactaaggctatcttccatgcttgagaatctgcgcaggatcgatctttccggtaatcacttgataactgataaatcacttttgtc |
215 |
Q |
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||||||||||||||||| ||||| |||||||||||| ||||||||||||| || |||||||| ||||||||||| | || |||||||| |||||||| |
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| T |
2006898 |
catctgattttggattaataaggtaatcttccatgctcgagaatctgcgcaaaattgatctttctggtaatcacttaaccaccgataaatcccttttgtc |
2006997 |
T |
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| Q |
216 |
tctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagt |
315 |
Q |
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||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||| ||||||| |
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| T |
2006998 |
tctatgccagaactgtagatcactggaagaaattttattcttccaatgtttcaaaatatcccaagttggaattgcttctgcgatccgaatgatgccaagt |
2007097 |
T |
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| Q |
316 |
tt |
317 |
Q |
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|| |
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| T |
2007098 |
tt |
2007099 |
T |
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