View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_22 (Length: 300)
Name: NF3806_low_22
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_22 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 9735586 - 9735844
Alignment:
| Q |
21 |
gtggattttaatttaaatttgaaaaatacttaaattctgaatggtagaaagatatatttatagcaaccaaatcataatttataaattaagagtattacta |
120 |
Q |
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| T |
9735586 |
gtggattttaatttaaatttgaaaaatacataaattcttaatggtagaaagacatatttataacaaccaaatcataatttataaattaagagtattacta |
9735685 |
T |
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| Q |
121 |
ttttagggtaattctggtatatttgaaaatatgttacaccgaaaaaattatgtatatatagtagtatgtatgtacctttatgatttttagttagtccata |
220 |
Q |
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| T |
9735686 |
ttttagggtaattctggtata-ttgaaaatatggtacaccaaaaaagttatg--tatatagtagtatgtatgtacctttatgattttaagttagtccata |
9735782 |
T |
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| Q |
221 |
aaaagagtatttgaatttgaaattgaaagtttgtaagaa-tttttctaagtgtttttgtgtttaaaat |
287 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
9735783 |
aaaagagt------atttgaaattgaaagtttgtaagaattttttttaagtgtttttgtgtttaaaat |
9735844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 42825449 - 42825418
Alignment:
| Q |
248 |
agtttgtaagaatttttctaagtgtttttgtg |
279 |
Q |
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| T |
42825449 |
agtttgtaagaatttttctaagtgtttttgtg |
42825418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 24901361 - 24901397
Alignment:
| Q |
241 |
aattgaaagtttgtaagaatttttctaagtgtttttg |
277 |
Q |
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| T |
24901361 |
aattgaaagtttataagaatttttttaagtgtttttg |
24901397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 14427646 - 14427703
Alignment:
| Q |
25 |
attttaatttaaatttgaaaaatacttaaattctgaatggtagaaagatatatttata |
82 |
Q |
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|||| ||||||||||||||||||| ||||||| | || |||| ||||| ||||||||| |
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| T |
14427646 |
atttaaatttaaatttgaaaaataattaaattgttaagggtataaagacatatttata |
14427703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 29232592 - 29232563
Alignment:
| Q |
248 |
agtttgtaagaatttttctaagtgtttttg |
277 |
Q |
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| T |
29232592 |
agtttgtaagaatttttctaagtgtttttg |
29232563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 29345891 - 29345862
Alignment:
| Q |
248 |
agtttgtaagaatttttctaagtgtttttg |
277 |
Q |
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| T |
29345891 |
agtttgtaagaatttttctaagtgtttttg |
29345862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 2574 - 2606
Alignment:
| Q |
242 |
attgaaagtttgtaagaatttttctaagtgttt |
274 |
Q |
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| T |
2574 |
attgaaagtttgtaagaatttctctaagtgttt |
2606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 11693475 - 11693447
Alignment:
| Q |
246 |
aaagtttgtaagaatttttctaagtgttt |
274 |
Q |
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| T |
11693475 |
aaagtttgtaagaatttttctaagtgttt |
11693447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 33545991 - 33546023
Alignment:
| Q |
242 |
attgaaagtttgtaagaatttttctaagtgttt |
274 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
33545991 |
attgaaagtttgtaagaatttttttaagtgttt |
33546023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 17246040 - 17246072
Alignment:
| Q |
242 |
attgaaagtttgtaagaatttttctaagtgttt |
274 |
Q |
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| T |
17246040 |
attgaaagtttataagaatttttctaagtgttt |
17246072 |
T |
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