View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_23 (Length: 293)
Name: NF3806_low_23
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 30837596 - 30837322
Alignment:
| Q |
1 |
cttttgaaaattaattgcttgtcctgatgtttgttcatacaccgttataatatgtcataattgtcgctttagaaggcttaactttaaaaagtaaaaatag |
100 |
Q |
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| T |
30837596 |
cttttggaaattaattgcttgtcctgatatttgttcatacaccgctataatatgtcataattgtcgctttagaaggcttaactttaaaaagtaaaaatag |
30837497 |
T |
|
| Q |
101 |
tcattcacaaataaaagatgagaaactataggagcatatattgttgcacccaaataataaatatatatggcggcaaatgacctccttgtctcaaccctcg |
200 |
Q |
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| T |
30837496 |
tcattcacaaataaaaggtgagaaactataggagcatatattgttgcacccaaataataaatatatatggcggcaaatgacctccttgtctcaaccctcg |
30837397 |
T |
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| Q |
201 |
acctggtataaatcggaccaactacctcatcattaactataatcgagtaatcaacagtctccacatatatcattac |
276 |
Q |
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| T |
30837396 |
acctggtat-aatcggaacaactacctcatcattaactataatcgagtaatcaacggtctccacatatatcattac |
30837322 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 35222290 - 35222413
Alignment:
| Q |
151 |
caaataataaatatatatggcggcaaatgacctccttgtctcaaccctcgacctggtataaatcggaccaactacctcatcattaactataatcgagtaa |
250 |
Q |
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|||||||| |||| ||||||| |||| || |||||||||| | ||||||||||| || ||| ||||||||| |||| ||||||||||| | |||||| |
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| T |
35222290 |
caaataatgaataagtatggcgacaaaggatctccttgtcttagtcctcgacctggaat-aataggaccaactgcctcgtcattaactattaccgagtag |
35222388 |
T |
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| Q |
251 |
tcaacagtctccacatatatcatta |
275 |
Q |
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| T |
35222389 |
tcggtagtctccacacacatcatta |
35222413 |
T |
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