View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3806_low_24 (Length: 289)
Name: NF3806_low_24
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 184374 - 184124
Alignment:
| Q |
23 |
gacaggaatattcacttctggagttttcttaaaattcaatactcctcctttcaataatgagccaggcattgtagcctgaacataaatgctctcgccactc |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
184374 |
gacaggaatattaacttctggagttttcttaaaattcattactcctcttttcaataatgagccaggtattgtagcctgaacataaatgctctcgccactc |
184275 |
T |
|
| Q |
123 |
ctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
184274 |
ctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggcttcaccacatataaactagagccag |
184175 |
T |
|
| Q |
223 |
caatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184174 |
caatagcatgttcaagtccctacaataacaggaaatcttatcaaatctctg |
184124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 590090 - 590231
Alignment:
| Q |
131 |
cctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagca |
230 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||| ||| ||||| |||||| |||||||||||||| ||||||| ||||||||||| |||||||||||| |
|
|
| T |
590090 |
cctgctcaagactgactccacatcttccatggccacttgtttaacatattccaaatcatcatcaggcttcaccaaatataaactagcaccagcaatagca |
590189 |
T |
|
| Q |
231 |
tgttcaagtccctacaataacaggaaatcttatcaaatctct |
272 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
590190 |
tgttcaagtccctgcaataacaggaaatcttatcaaatctct |
590231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 44607446 - 44607271
Alignment:
| Q |
96 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
195 |
Q |
| |
|
||||| ||| ||| || ||| |||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||||| || |
|
|
| T |
44607446 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagactgactccacgtcttccaaggctgcttttttaatatatttcaaatcatcattag |
44607347 |
T |
|
| Q |
196 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctc |
271 |
Q |
| |
|
| |||||||||| |||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44607346 |
gcttcaccacatgtaaactagcgccagcaacagcgtgttcaagtccctgaaataacaggaaatcttatcaaatctc |
44607271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 44628952 - 44628805
Alignment:
| Q |
96 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
195 |
Q |
| |
|
||||| ||| ||| || ||| |||||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
|
|
| T |
44628952 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagaccgactccacgtcttccaaagctgcttttttaatatattccaaatcatcatcag |
44628853 |
T |
|
| Q |
196 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccct |
243 |
Q |
| |
|
| || |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
44628852 |
gctttaccacatataaactagctccagcaatagcatgttcaagcccct |
44628805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University