View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_26 (Length: 278)
Name: NF3806_low_26
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 34432014 - 34432259
Alignment:
| Q |
16 |
attattactactattacttcctttgttcttgcactttatagaaatctcatgacacctacctttctcatgaaacttagctttagttgaaaacttcctctta |
115 |
Q |
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| T |
34432014 |
attattaccactattacttcctttgttcttacactttatagaaatctcatgacacctacctttctcatgaaacttagctttagttgaaaacttcctctta |
34432113 |
T |
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| Q |
116 |
ccaaatatgtgttcctttttggaaacaagaattggatcaatgagtgatggtctacatccagttcttctgtaagcttctttctttagatcaccaagaagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432114 |
ccaaatatgtgttcctttttggaaacaagaattggatcaatgagtgatggtctacatccagttcttctgtaagcttctttctttagatcaccaagaagta |
34432213 |
T |
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| Q |
216 |
acacaacctcttgatcacaaaccactgctacatagtactctgaagt |
261 |
Q |
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| T |
34432214 |
acacaacctcttgatcacaaaccactgctacatagtactctgaagt |
34432259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 261
Target Start/End: Original strand, 43402978 - 43403186
Alignment:
| Q |
53 |
atagaaatctcatgacacctacctttctcatgaaacttagctttagttgaaaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggat |
152 |
Q |
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| T |
43402978 |
atagaaatctcatgccatttacccttctcatgaaacttagctctggttgagaatttcttcttaccaaatatatgctctttctttgaaaccaatataggat |
43403077 |
T |
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| Q |
153 |
caatgagtgatggtctacatccagttcttctgtaagcttctttctttagatcaccaagaagtaacacaacctcttgatcacaaaccactgctacatagta |
252 |
Q |
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| T |
43403078 |
caataagagctggtctacaacctgttcttctataagcatcttttttaagatcaccaagaagaagaacaacctcttcatcacaaacaacagctacatagta |
43403177 |
T |
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| Q |
253 |
ctctgaagt |
261 |
Q |
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|||||||| |
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| T |
43403178 |
ttctgaagt |
43403186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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