View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3806_low_27 (Length: 270)
Name: NF3806_low_27
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 40111898 - 40112152
Alignment:
| Q |
1 |
tggatcatgcttatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatatgttttcgaacgagattagttattgttaaacggtggtg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
40111898 |
tggatcatgcgtatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatatgttttcgacggagattagttattgttaaacggcggtg |
40111997 |
T |
|
| Q |
101 |
gaaacttctaaccaatataatggtnnnnnnntaaccatgattaaaaacaaatgaatataaatagcaacatagcttgcaccggatgttgcatgcagttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111998 |
gaaacttctaaccaatataatggtaaaaaaataaccatgattaaaaacaaatgaatataaatagcaacatagcttgcaccggatgttgcatgcagttctt |
40112097 |
T |
|
| Q |
201 |
accaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112098 |
accaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaat |
40112152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 40149794 - 40149848
Alignment:
| Q |
198 |
cttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttcc |
252 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
40149794 |
cttaccaattgggcttcaaatttgcagccacgtataaccaataaccagatgttcc |
40149848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 40156168 - 40156223
Alignment:
| Q |
199 |
ttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaa |
254 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||| ||||||||||| || ||||||| |
|
|
| T |
40156168 |
ttaccaattgggcttcaaatttgcagccaggtataaccaataacccgaagttccaa |
40156223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 32729359 - 32729307
Alignment:
| Q |
72 |
acgagattagttattgttaaacggtggtggaaacttctaaccaatataatggt |
124 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| |||||||| ||||| |
|
|
| T |
32729359 |
acgagattagtcattgttaagcggttgtggaaacttcataccaatatcatggt |
32729307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University