View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3806_low_29 (Length: 258)
Name: NF3806_low_29
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8350288 - 8350052
Alignment:
| Q |
1 |
ctgctctgaacctatttagatttaattttcatgaaggctgaaataatcactgtttttgttgtcatattcaatatatgtcctactcaccacaagacattag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8350288 |
ctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcatattcaatatatgtcctactctccacaagacattag |
8350189 |
T |
|
| Q |
101 |
aaaaatgttattttggccactgcatttgtcacagtccgtccacccaaaccagaagatttaattgaaacaagtgatgagtcaaagttaagattaaagttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8350188 |
aaaaatgttattttggccactgcatttgtcaca----gtccacccaaaccagaagatttaattgaaacaagtgatgagtcaaagttaagattaaagttga |
8350093 |
T |
|
| Q |
201 |
atggcctgtaagaagttgtgatcataaaagaaactttgttc |
241 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
8350092 |
atggccagttagaagttgtgatcataaaagaaactttgttc |
8350052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 8480828 - 8481059
Alignment:
| Q |
4 |
ctctgaacctatttagatttaattttcatgaaggctgaaataatcactgtttttgttgtcatattcaatatatgtcctactcaccacaagacattagaaa |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8480828 |
ctctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcatattcaatatatgtcctactcaccacaagacattagaaa |
8480927 |
T |
|
| Q |
104 |
aatgttattttggccactgcatttgtcacagtccgtccacccaaaccagaagatttaattgaaacaagtgatgagtcaaagttaagattaaagttgaatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8480928 |
aatgttattttggccactgcatttgtcaca----gtccacccaaaccagaagatttaattgaaacaagtgatgagtc--agttaagattaaagttgaatg |
8481021 |
T |
|
| Q |
204 |
gcctgtaagaagttgtgatcataaaagaaactttgttc |
241 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8481022 |
gcctgttagaagttgtgatcataaaagaaactttgttc |
8481059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8415107 - 8415057
Alignment:
| Q |
1 |
ctgctctgaacctatttagatttaattttcatgaaggctgaaataatcact |
51 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
8415107 |
ctgctctgaacctatttagattcgattttcatgatggctgaaacaatcact |
8415057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8361698 - 8361634
Alignment:
| Q |
1 |
ctgctctgaacctatttagatttaattttcatgaaggctgaaataatcactgtttttgttgtcat |
65 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | |||| ||| |||||||| |||| ||||||| |
|
|
| T |
8361698 |
ctgctctgaacctattttgattcaattttcattatggctaaaacaatcactgattttattgtcat |
8361634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University