View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_3 (Length: 622)
Name: NF3806_low_3
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 597
Target Start/End: Complemental strand, 26867438 - 26866863
Alignment:
| Q |
19 |
gagttatgatactatggtcacttttgacgaatcatactatccccataattgttttgaagttgataagagaataatacattggtaagcaaagattttcgtg |
118 |
Q |
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| T |
26867438 |
gagttatgatactatggtcacttttgacgaatcatattatccccataattattttaaagttgataagagaataatacattggtaagcaaagattttcgtg |
26867339 |
T |
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| Q |
119 |
tcaattgtagtatgatttatgagtttaggtagtttttggattatata--attcataaatccctnnnnnnntgtttagataatatgattcgaacataagta |
216 |
Q |
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| T |
26867338 |
tcaattgtagtatgatttatgagtttaggtagtttttggattatatataattcataaatcccttaaaaaatgtttagataatatgattcgaacataagta |
26867239 |
T |
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| Q |
217 |
cgtgagaagggtggaaacgaaatagtctaatttgttgcctgaactaatgaatgtacattttacatggaagtgacgatgcaaagagttggttaactaatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26867238 |
cgtgagaagggtggaaacgaaatagtctaatttgttgcctgaactaatgaatgtacgttttacatagaagtgacgatgcaaagagttggttaactaatct |
26867139 |
T |
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| Q |
317 |
gtattggtcgttggcgtcaacatgataatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatctttacattaaatata |
416 |
Q |
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| T |
26867138 |
gtattggtcgttggcgtctgcatgataatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatctttacattaaatata |
26867039 |
T |
|
| Q |
417 |
aaaatattctggtatagggatattctatcataatcgaagttgttacttgttagctaacgcttcaaagcgaaaatgtatatataattaggacaaatcctgt |
516 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26867038 |
aaaatattctggtatagggatattctatcaaaatcgaagttgttacttgttagctaacgctt-----cgaaaatgtatatataattaggacaaatcctgt |
26866944 |
T |
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| Q |
517 |
tgagccaacgttttttacttcaaccgtacagcccaatatatagtactatatccgttcctgattataagaccattttgagaa |
597 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| | | ||||||||||| ||||||||| |
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| T |
26866943 |
tgagccaacgttttttacttcaactgtacaacccaatatatagtactacctccgtccttaattataagacccttttgagaa |
26866863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 597
Target Start/End: Complemental strand, 34948688 - 34948651
Alignment:
| Q |
560 |
tactatatccgttcctgattataagaccattttgagaa |
597 |
Q |
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| T |
34948688 |
tactacatccgttcctaattataagaccattttgagaa |
34948651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 14607278 - 14607230
Alignment:
| Q |
119 |
tcaattgtagtatgatttatgagtttaggtagtttttggattatataat |
167 |
Q |
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| T |
14607278 |
tcaattttattatgatttttgtgtttaggtagtttttggattatataat |
14607230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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