View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_32 (Length: 242)
Name: NF3806_low_32
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 39308308 - 39308085
Alignment:
| Q |
18 |
cattgcaatgcttaaaatatgtggtttttgttgttatgaaactgtaacaggaaaagtggttttgcgccttcaaatgagacaacaactaagttgatctttg |
117 |
Q |
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| T |
39308308 |
cattgcaatgcttaaaatatgtggtttttgttgttatgaaactgtaacaggaaaagtggttttgcgccttcaaatgagacaacaactaagttgatctttg |
39308209 |
T |
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| Q |
118 |
aatatttcgagatagtttgtccatattttcgcatgcctctaattaataaggtaagtctttttctttttcagatatacc---tcacattatattccatttt |
214 |
Q |
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| T |
39308208 |
aatattttgagatagtttgtccatatttacgcatgcctctaattaataaggtaagtctttttctttttcagatatacctcttcacattatattccatttt |
39308109 |
T |
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| Q |
215 |
tctagtttaacccctaaaaatttctttt |
242 |
Q |
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| T |
39308108 |
t----tataacccctaaaaatttctttt |
39308085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 39300348 - 39300253
Alignment:
| Q |
147 |
cgcatgcctctaattaataaggtaagtctttttctttttcagatatacctc---acattatattccatttttctagtttaacccctaaaaatttct |
239 |
Q |
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| T |
39300348 |
cgcatgcatctgattaataaggcaagttcttttcattttcagatatacctcttcacattatattccatttttctagtttaaacgctaaatatttct |
39300253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 26556068 - 26555996
Alignment:
| Q |
155 |
tctaattaataaggtaagtctttttctttttcagatatacctc---acattatattccatttttctagtttaa |
224 |
Q |
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| T |
26556068 |
tctaattaataaggcaagtccttttctttttcatatctacttcttcacattatattccatttttctagtttaa |
26555996 |
T |
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