View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_34 (Length: 237)
Name: NF3806_low_34
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 8335613 - 8335487
Alignment:
| Q |
22 |
attagctttctgattttcttacaatatagtgtcaacaacattcaggtatttataggtactaagctatgtatgtatctagtcataatttcacgtaatactg |
121 |
Q |
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| T |
8335613 |
attagctttctgattttcttacaatatagtgtcaacaacattcaggtatttatagatactaagctat----gtatctagtcataattacacgtaatactg |
8335518 |
T |
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| Q |
122 |
attaaattcttatccgccttaatttttaagg |
152 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8335517 |
attaaattcttatccgccttaatttttaagg |
8335487 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 8335450 - 8335415
Alignment:
| Q |
189 |
cattataatattcatattagtcttcgagaataatct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8335450 |
cattataatattcatattagtcttcgagaataatct |
8335415 |
T |
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