View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3806_low_35 (Length: 237)
Name: NF3806_low_35
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 22589913 - 22590135
Alignment:
| Q |
1 |
tcgccggtcaaagttctccaatcccgaaataaattgggggtt---gttgtggacataatagagaataaggttatcagctttgtttatccaaatgaggtca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22589913 |
tcgccggtcaaagttctccaatcccgaaataaattgggggttttggttgtggacataatagagaataaggttatcagctttgtttatccaaatgaggtca |
22590012 |
T |
|
| Q |
98 |
atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg |
197 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22590013 |
atggtggccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg |
22590112 |
T |
|
| Q |
198 |
aatttaatggttgtggtggggtt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22590113 |
aatttaatggttgtggtggggtt |
22590135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 7305434 - 7305339
Alignment:
| Q |
125 |
tggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggtt |
220 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||| || ||||||||| | ||||||||||| |
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|
| T |
7305434 |
tggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttattgaataggaagaagagagaaatttaatgatggtggtggggtt |
7305339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 3978921 - 3979038
Alignment:
| Q |
99 |
tggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaagaagaaagg |
197 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || | ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| || || |
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|
| T |
3978921 |
tggtggccggaaagtaggagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagt |
3979019 |
T |
|
| Q |
198 |
aatttaatggttgtggtgg |
216 |
Q |
| |
|
| || |||||| ||||||| |
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|
| T |
3979020 |
agttcaatggtggtggtgg |
3979038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30935160 - 30934938
Alignment:
| Q |
1 |
tcgccggtcaaagttctccaatcccgaaataaattgggggtt---gttgtggacataatagagaataaggttatcagctttgtttatccaaatgaggtca |
97 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
30935160 |
tcgccggtaaaagttctcgaatcccgaaataaattgggggttttggttgtggacataatagagaataaggttatcacttttgtttatccaaatgaggtca |
30935061 |
T |
|
| Q |
98 |
atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg |
197 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30935060 |
atggtagccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg |
30934961 |
T |
|
| Q |
198 |
aatttaatggttgtggtggggtt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30934960 |
aatttaatggttgtggtggggtt |
30934938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 1310160 - 1310255
Alignment:
| Q |
125 |
tggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggtggggtt |
220 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||| ||| |||||||| || |||||||||| || ||||||||| | ||||||||||| |
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|
| T |
1310160 |
tggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttatttaataggaagaagagagaaatttaatgatggtggtggggtt |
1310255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 23233304 - 23233352
Alignment:
| Q |
160 |
aaaataaattagtggttattgaagaggaagaagaaaggaatttaatggt |
208 |
Q |
| |
|
||||||||| ||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
23233304 |
aaaataaatgggtgatttttgaagaggaagaagagaggaatttaatggt |
23233352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 37415924 - 37416029
Alignment:
| Q |
115 |
agagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtggt |
214 |
Q |
| |
|
|||||||| |||||||| || ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| ||||| |
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|
| T |
37415924 |
agagagaaagtggtgattggggtatttcaaattctcaccaatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggt |
37416023 |
T |
|
| Q |
215 |
ggggtt |
220 |
Q |
| |
|
|||||| |
|
|
| T |
37416024 |
ggggtt |
37416029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 55424598 - 55424475
Alignment:
| Q |
98 |
atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg |
197 |
Q |
| |
|
|||||||||| ||| | |||| ||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
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|
| T |
55424598 |
atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagggagaagagatg |
55424499 |
T |
|
| Q |
198 |
aatttaatggttgtggtggggttt |
221 |
Q |
| |
|
||||| |||| || ||||||||| |
|
|
| T |
55424498 |
aatttgttggtggttgtggggttt |
55424475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 31282120 - 31282215
Alignment:
| Q |
98 |
atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaaga |
193 |
Q |
| |
|
|||||||||| ||| | |||| ||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31282120 |
atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagggagaaga |
31282215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 13077572 - 13077662
Alignment:
| Q |
100 |
ggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaaga |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || || | ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| |
|
|
| T |
13077572 |
ggtggccggaaagtaagagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaaga |
13077662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 28656700 - 28656823
Alignment:
| Q |
98 |
atggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaagg |
197 |
Q |
| |
|
|||||||||| ||| | |||| ||| |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
28656700 |
atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaataaattagtggttattgaagagagagaagagatg |
28656799 |
T |
|
| Q |
198 |
aatttaatggttgtggtggggttt |
221 |
Q |
| |
|
|||| | |||| || ||||||||| |
|
|
| T |
28656800 |
aattcattggtggttgtggggttt |
28656823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 11796879 - 11796955
Alignment:
| Q |
137 |
tatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaagaaaggaatttaatggttgtgg |
213 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||| |||||||| || |||||||||| | ||||||||||| |||| |
|
|
| T |
11796879 |
tatttcaaattctcaccaatttaaaaataagttaatggttattaaaaaggaagaagagataaatttaatggtggtgg |
11796955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 19278849 - 19278732
Alignment:
| Q |
99 |
tggtggccggaaagtaagagagaagttggtgatttggatatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaagaagaaagg |
197 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || | ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| || || |
|
|
| T |
19278849 |
tggtggccggaaagtaagagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagt |
19278751 |
T |
|
| Q |
198 |
aatttaatggttgtggtgg |
216 |
Q |
| |
|
| || |||||| ||||||| |
|
|
| T |
19278750 |
agttcaatggtggtggtgg |
19278732 |
T |
|
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