View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3806_low_38 (Length: 224)

Name: NF3806_low_38
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3806_low_38
NF3806_low_38
[»] chr4 (4 HSPs)
chr4 (49-134)||(1048534-1048619)
chr4 (142-209)||(1048679-1048746)
chr4 (102-171)||(2635084-2635153)
chr4 (120-204)||(30472873-30472958)
[»] chr1 (3 HSPs)
chr1 (121-214)||(28083939-28084033)
chr1 (126-171)||(6021749-6021794)
chr1 (121-170)||(32088669-32088718)
[»] chr5 (2 HSPs)
chr5 (103-172)||(11911903-11911972)
chr5 (124-171)||(38045392-38045439)
[»] chr6 (5 HSPs)
chr6 (123-204)||(28052891-28052973)
chr6 (103-170)||(29240548-29240615)
chr6 (122-171)||(578871-578920)
chr6 (105-169)||(1508142-1508206)
chr6 (121-204)||(26280545-26280629)
[»] chr7 (2 HSPs)
chr7 (121-168)||(28430288-28430335)
chr7 (120-170)||(41360025-41360074)
[»] chr3 (1 HSPs)
chr3 (121-168)||(54596758-54596805)
[»] chr2 (2 HSPs)
chr2 (126-171)||(7630361-7630406)
chr2 (126-205)||(4382916-4382996)
[»] chr8 (2 HSPs)
chr8 (87-171)||(8252703-8252786)
chr8 (120-168)||(18355928-18355976)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 1048534 - 1048619
Alignment:
Q  49 ctttcactaattccttattcatatgaaactgttttacatagtgtatgtttggtccaaaattgaatcaagaaatgtaaaattgattt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1048534 ctttcactaattccttattcatatgaaactgttttacatagtgtatgtttggtccaaaattgaatcaagaaatgtaaaattgattt 1048619  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 1048679 - 1048746
Alignment:
Q  142 ttcaattgttttcaagtagaattgattttgtctacgtattgattctacttaaagttagaatttatagc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1048679 ttcaattgttttcaagtagaattgattttgtctacgtattgattctacttaaagttagaatttatagc 1048746  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 2635084 - 2635153
Alignment:
Q  102 ccaaaattgaatcaagaaatgtaaaattgattttgacatgttcaattgttttcaagtagaattgattttg 171  Q
    |||||||||| || |||| |||||||||||||||||||||||  |||| ||| |||||||| ||||||||    
T  2635084 ccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttg 2635153  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 30472873 - 30472958
Alignment:
Q  120 atgtaaaattgattttgacatgttcaattgttttcaagtagaattgattttgtctac-gtattgattctacttaaagttagaattt 204  Q
    |||||||||||||||||||||||| | ||| | | |||||||||| ||||| ||| |   ||||||| ||||| ||||||||||||    
T  30472873 atgtaaaattgattttgacatgtttacttgctcttaagtagaattaattttatcttcaaaattgattttacttcaagttagaattt 30472958  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 28084033 - 28083939
Alignment:
Q  121 tgtaaaattgattttgacatgttcaattgttttcaagtagaattgattttgtctacgt-attgattctacttaaagttagaatttatagcctttg 214  Q
    |||| |||||||| |||||| ||   |||||||| ||||||||||||||||||| ||| ||||||||||||| ||| |||||||| |||| ||||    
T  28084033 tgtagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttg 28083939  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 6021749 - 6021794
Alignment:
Q  126 aattgattttgacatgttcaattgttttcaagtagaattgattttg 171  Q
    |||||||||||||| |||  |||| |||||||||||||||||||||    
T  6021749 aattgattttgacaagtttgattgatttcaagtagaattgattttg 6021794  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 32088718 - 32088669
Alignment:
Q  121 tgtaaaattgattttgacatgttcaattgttttcaagtagaattgatttt 170  Q
    |||||||||||||||||||||||   ||| | ||||||||||||||||||    
T  32088718 tgtaaaattgattttgacatgtttggttgctctcaagtagaattgatttt 32088669  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 11911972 - 11911903
Alignment:
Q  103 caaaattgaatcaagaaatgtaaaattgattttgacatgttcaattgttttcaagtagaattgattttgt 172  Q
    ||||||||| || ||| ||||||||||||||||||| |||| | |||| || ||||||||||||||||||    
T  11911972 caaaattgattctagagatgtaaaattgattttgacttgtttagttgtgttaaagtagaattgattttgt 11911903  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 38045392 - 38045439
Alignment:
Q  124 aaaattgattttgacatgttcaattgttttcaagtagaattgattttg 171  Q
    ||||||||||||||||||||  | |||| |||||||||||||||||||    
T  38045392 aaaattgattttgacatgtttgaatgttctcaagtagaattgattttg 38045439  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 28052891 - 28052973
Alignment:
Q  123 taaaattgattttgacatgttcaattgttttcaagtagaattgattttgtcta-cgtattgattctacttaaagttagaattt 204  Q
    ||||||||||| ||||||||| ||||||| ||||||| |||||||| ||||||  | ||||||| ||||| ||| ||||||||    
T  28052891 taaaattgattctgacatgtttaattgttatcaagtataattgattgtgtctatagaattgattatacttgaagatagaattt 28052973  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 29240615 - 29240548
Alignment:
Q  103 caaaattgaatcaagaaatgtaaaattgattttgacatgttcaattgttttcaagtagaattgatttt 170  Q
    ||||||||| || |||  |||||||||||||||||||||||    | |||||||||||||||||||||    
T  29240615 caaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgatttt 29240548  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 578871 - 578920
Alignment:
Q  122 gtaaaattgattttgacatgttcaattgttttcaagtagaattgattttg 171  Q
    |||||||||||||||||||||| | ||||||| |||||||| | ||||||    
T  578871 gtaaaattgattttgacatgtttagttgtttttaagtagaaataattttg 578920  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 1508206 - 1508142
Alignment:
Q  105 aaattgaatcaagaaatgtaaaattgattttgacatgttcaattgttttcaagtagaattgattt 169  Q
    |||||||||||||| ||||| ||| |||||||| |||||  ||||||||| |||| |||| ||||    
T  1508206 aaattgaatcaagatatgtagaatcgattttgagatgtttgattgttttcgagtataattaattt 1508142  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 26280545 - 26280629
Alignment:
Q  121 tgtaaaattgattttgacatgttcaattgttttcaagtagaattgattttgtct-acgtattgattctacttaaagttagaattt 204  Q
    |||| ||||||||||||||||||  ||||||||   ||||||||||||||| || | | |||||||| |||| ||| ||||||||    
T  26280545 tgtagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaattt 26280629  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 28430335 - 28430288
Alignment:
Q  121 tgtaaaattgattttgacatgttcaattgttttcaagtagaattgatt 168  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  28430335 tgtaaaattgattttgatatgtttaattgtttttgagtagaattgatt 28430288  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 41360025 - 41360074
Alignment:
Q  120 atgtaaaattgattttgacatgttcaattgttttcaagtagaattgatttt 170  Q
    ||||| |||||||||||||||||| |||| | |||||||||||||||||||    
T  41360025 atgtataattgattttgacatgtttaatt-tcttcaagtagaattgatttt 41360074  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 54596758 - 54596805
Alignment:
Q  121 tgtaaaattgattttgacatgttcaattgttttcaagtagaattgatt 168  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||||    
T  54596758 tgtaaaattgattatgacatgtttggttgttttcaagtagaattgatt 54596805  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 7630361 - 7630406
Alignment:
Q  126 aattgattttgacatgttcaattgttttcaagtagaattgattttg 171  Q
    ||||||||||||||||||   ||| |||||||||||||||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgattttg 7630406  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 4382916 - 4382996
Alignment:
Q  126 aattgattttgacatgttcaattgttttcaagtagaattgattttgtctacg-tattgattctacttaaagttagaattta 205  Q
    ||||||||| || ||||| |||||||||||| || ||||||||||| ||  |  ||||||||||||||||| | |||||||    
T  4382916 aattgatttagatatgtttaattgttttcaaatataattgattttgcctctgaaattgattctacttaaagatggaattta 4382996  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 8252703 - 8252786
Alignment:
Q  87 tagtgtatgtttggtccaaaattgaatcaagaaatgtaaaattgattttgacatgttcaattgttttcaagtagaattgattttg 171  Q
    |||||||||||||| || ||||||| || |||  |||| || |||||||||||||||    |||||| |||||||||||||||||    
T  8252703 tagtgtatgtttgggccgaaattgattctagaggtgtagaactgattttgacatgtttggctgtttt-aagtagaattgattttg 8252786  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 18355976 - 18355928
Alignment:
Q  120 atgtaaaattgattttgacatgttcaattgttttcaagtagaattgatt 168  Q
    ||||| |||||||||||||||||   ||||||||| |||||||||||||    
T  18355976 atgtagaattgattttgacatgtatgattgttttcgagtagaattgatt 18355928  T

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