View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_5 (Length: 519)
Name: NF3806_low_5
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 14 - 503
Target Start/End: Complemental strand, 28888748 - 28888259
Alignment:
| Q |
14 |
tagtcccatggtgatgtttttatcatttcattcctatgtttgattcactaattgagtttctttacacnnnnnnnngttcgtgtgccactaatttagttaa |
113 |
Q |
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| T |
28888748 |
tagtcccatggtgatgtttttatcatttcattcctatgtttgattcactaattgagtttctttacacaaaaaaaagttcgtgtgccactaatttagttaa |
28888649 |
T |
|
| Q |
114 |
tgattgtaccaagtatgtatgaaatgtagctcacaatatcctgtgttacttttcatgacttaggtccaaaaactccagtgaaaaataatcaagatggtac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888648 |
tgattgtaccaagtatgtatgaaatgtagctcacaatatcctgtgttacttttcatgacttaggtccaaaaactccagtgaaaaataatcaagatggtac |
28888549 |
T |
|
| Q |
214 |
agcctttcctgccgctaccgttgatcaagtgtatgtccatactgtttcccaagtcaaagaaacttctcaaaacctgatacaagatacctcaataagccga |
313 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28888548 |
agcctttcctgccgctactgttgatcaagtgtctgtccatactgtttcccaagtcaaagaaacttctcaaaacctgattcaagatacctcaataagccga |
28888449 |
T |
|
| Q |
314 |
gatgatttcaagcatggactccttcaagaatcaagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888448 |
gatgatttcaagcatggactccttcaagaatcaagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatc |
28888349 |
T |
|
| Q |
414 |
aaacagtaaaggaaaggaaaagcgttatggttgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaag |
503 |
Q |
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| T |
28888348 |
aaacagtaaaggaaaggaaaagcgttatggttgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaag |
28888259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 89 - 343
Target Start/End: Complemental strand, 28931445 - 28931194
Alignment:
| Q |
89 |
gttcgtgtgccactaatttagttaatgattgtaccaagtatgtatgaaatgtagctcacaatatcctgtgttacttttcatgacttaggtccaaaaactc |
188 |
Q |
| |
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|||| |||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||| |||| || ||||||| |||||||||||||||||| |
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| T |
28931445 |
gttcatgtgccactaatttagttaatgtttctaccaagtatgtatagaatgcagctcacaatatcttgtgatatttttcattacttaggtccaaaaactc |
28931346 |
T |
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| Q |
189 |
cagtgaaaaataatcaagatggtacagcctttcctgccgctaccgttgatcaagtgtatgtccatactgtttcccaagtcaaagaaacttctcaaaacct |
288 |
Q |
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| T |
28931345 |
cagtgaaaaataaccaagatgatacaacctttcctgcc---actgttgtacaagtgtctgtccatactgcttcccaagaaaaagacacttctcaaaacct |
28931249 |
T |
|
| Q |
289 |
gatacaagatacctcaataagccgagatgatttcaagcatggactccttcaagaa |
343 |
Q |
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||| ||| ||||| | |||||||||||||| |||||||| |||| || ||||| |
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| T |
28931248 |
gattcaatataccatgaaaagccgagatgattgcaagcatgcactcgttaaagaa |
28931194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 345 - 503
Target Start/End: Complemental strand, 28931150 - 28930992
Alignment:
| Q |
345 |
caagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttatggt |
444 |
Q |
| |
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||||||| |||||| ||||||| ||||||||||||||||||||| | |||| |||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
28931150 |
caagtaacactatatctgcttcttatgatgtagattgcagaaatctgaatactaacatggatgccaatcagacagtaaaggaaattcaaagcgttatggt |
28931051 |
T |
|
| Q |
445 |
tgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaag |
503 |
Q |
| |
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||| |||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
28931050 |
tgctgatcctgttaagccgactgtcaatgattttattgtgttaagtgacagtgatgaag |
28930992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 28922274 - 28922168
Alignment:
| Q |
120 |
taccaagtatgtatgaaatgtagctcacaatatcctgtgttacttttcatgacttaggtccaaaaactccagtgaaaaataatcaagatggtacagcctt |
219 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||| | ||||||| |
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| T |
28922274 |
taccaagtatgtgtaaaatgtatctcacaatatcctgtgttaattttcatgacttaggtccaaaatctcctgtgaaaaataaccaagatgatccagcctt |
28922175 |
T |
|
| Q |
220 |
tcctgcc |
226 |
Q |
| |
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||||||| |
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| T |
28922174 |
tcctgcc |
28922168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 28898346 - 28898215
Alignment:
| Q |
95 |
gtgccactaatttagttaatgattgtaccaagtatgtatgaaatgtagctcacaatatcctgtgttacttttcatgacttaggtccaaaaactccagtga |
194 |
Q |
| |
|
||||||||||||| |||||| ||| ||||| ||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||| |
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| T |
28898346 |
gtgccactaatttcattaatgtttggaccaaatatgtgtaaaatgtagctcacaatattctgtgttgattttcatgacttaggtccaaaatctacagtga |
28898247 |
T |
|
| Q |
195 |
aaaataatcaagatggtacagcctttcctgcc |
226 |
Q |
| |
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|||| || |||||| ||||||||||||||| |
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| T |
28898246 |
aaaaaaacaaagatgaaacagcctttcctgcc |
28898215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 503
Target Start/End: Complemental strand, 28898081 - 28897923
Alignment:
| Q |
345 |
caagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttatggt |
444 |
Q |
| |
|
||||||| |||||| |||||||| || |||||||||||||||||| || |||| |||||||| |||| ||||||||||||||| |||| | || |
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| T |
28898081 |
caagtaacactatatctgcttctgttggtgtagattgcagaaatctgagtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgt |
28897982 |
T |
|
| Q |
445 |
tgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaag |
503 |
Q |
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||| |||| ||| ||||||| |||||||||||||||| | ||||||||||| ||||||| |
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| T |
28897981 |
tgctgatcttgttaaggcgactgtcaatgatgttattattttaagtgacagcgatgaag |
28897923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 503
Target Start/End: Complemental strand, 28912570 - 28912428
Alignment:
| Q |
361 |
tgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttatggttgcggatcctgtcaag |
460 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||| |||||||| |||| ||||||||||||||| |||||||| ||| | ||||| || ||| |
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|
| T |
28912570 |
tgcttctgaggatgtagattgcagaaatctgagtattaacatggatgccaatcatacagtaaaggaaaggcgaagcgttactgtttcagatcccgttaag |
28912471 |
T |
|
| Q |
461 |
gcgattgtcaatgatgttattgtgttaagtgacagtgatgaag |
503 |
Q |
| |
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|| || |||||||||||||||| ||||||||||||||||||| |
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| T |
28912470 |
gcaatcatcaatgatgttattgttttaagtgacagtgatgaag |
28912428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 342 - 503
Target Start/End: Complemental strand, 28922085 - 28921924
Alignment:
| Q |
342 |
aatcaagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttat |
441 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||| ||||||||||||| || || | |||||||| |||| |||||||||||||| ||||| | |
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| T |
28922085 |
aatcaagtaacactatatctgcttctgatgatgtaaattgcagaaatctgagtactgacatggatgccaatcatgcagtaaaggaaaggcgaagcgcttc |
28921986 |
T |
|
| Q |
442 |
ggttgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaag |
503 |
Q |
| |
|
|||||| ||||| || |||| ||| |||||||||| || |||||||||||||||||||||| |
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|
| T |
28921985 |
ggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaag |
28921924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 28912794 - 28912708
Alignment:
| Q |
140 |
tagctcacaatatcctgtgttacttttcatgacttaggtccaaaaactccagtgaaaaataatcaagatggtacagcctttcctgcc |
226 |
Q |
| |
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||||||||| |||| ||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||| | ||| |||||||||| |
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| T |
28912794 |
tagctcacagtatcttgtgttaattttcatgacttaggtccaaaatctccggtgaaaaataaccaagatgatccagtctttcctgcc |
28912708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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