View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3806_low_7 (Length: 477)

Name: NF3806_low_7
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3806_low_7
NF3806_low_7
[»] chr8 (2 HSPs)
chr8 (16-460)||(8001186-8001628)
chr8 (308-382)||(29527718-29527793)
[»] chr5 (7 HSPs)
chr5 (308-443)||(39664388-39664524)
chr5 (352-439)||(39663988-39664076)
chr5 (326-406)||(14537587-14537667)
chr5 (308-393)||(14536966-14537051)
chr5 (315-405)||(42767897-42767988)
chr5 (346-446)||(14536733-14536834)
chr5 (338-370)||(11051701-11051733)
[»] chr1 (1 HSPs)
chr1 (331-380)||(8376579-8376628)
[»] chr6 (3 HSPs)
chr6 (318-406)||(3588417-3588503)
chr6 (327-379)||(2425567-2425619)
chr6 (342-406)||(3593697-3593761)
[»] chr3 (2 HSPs)
chr3 (341-444)||(32908746-32908851)
chr3 (326-406)||(19552983-19553062)


Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 8001628 - 8001186
Alignment:
Q  16 atacaaacctaaacacgtagttatctcacatataatcaagactaacacctaaagggtgggttctatactataggaggaattcacctggtgataatttgga 115  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8001628 atacaaacctaaaca-gtagttatctcgcatataatcaagactaacacctaaagggtgggttctatactataggaggaattcacctagtgataatttgga 8001530  T
Q  116 cactttcaaaggttccaagttccaaacccttagcactcaaagctctagctcttgcttcttcttccaatacttgcttctaatatcaaatcaaacctcaaaa 215  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8001529 cactttcaaaggttcaaagttccaaacccttagcacccaaagctctagctcttgcttcttcttccaatacttgcttctaatatcaaattaaacctcaaaa 8001430  T
Q  216 gttcaataagatgtacatatgcatacaatctgctgcttgaatttgcgaaagttccaagttgagggtttgagaggagagggagaagaacatgatttttaac 315  Q
    |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8001429 gttcaataagatg--cacatgcatacaatctgctgcttgaatttgcgaaagttccaagttgagggttggagaggagagggagaagaacatgatttttaac 8001332  T
Q  316 aaggttaatcgaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaatattagga- 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8001331 aaggttaatcgaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaatattaggac 8001232  T
Q  415 gacgggttgtaatatcattatctttgaagatatgggggattaattt 460  Q
    |  ||||||||||||||||||||||||||| |||||||||||||||    
T  8001231 ggggggttgtaatatcattatctttgaagagatgggggattaattt 8001186  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 29527718 - 29527793
Alignment:
Q  308 tttttaacaagg-ttaatcgaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaa 382  Q
    |||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||||||   ||||||||||    
T  29527718 tttttaacaagggttaaatgaaaattaatggaaaaatataaatttggatcaaaatatataattgaacatctttgaa 29527793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 308 - 443
Target Start/End: Original strand, 39664388 - 39664524
Alignment:
Q  308 tttttaacaaggttaatcgaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaat 407  Q
    ||||||||| ||||||  | || ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  39664388 tttttaacagggttaaatggaagttatcggaaaaatataaattcggatgaaaatatataattttgcatctttgaagggaaggttgtgtatgttttgaaat 39664487  T
Q  408 attaggaga-cgggttgtaatatcattatctttgaag 443  Q
    || ||| ||  |||||||||||||| ||| |||||||    
T  39664488 atgaggggagggggttgtaatatcactatatttgaag 39664524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 39664076 - 39663988
Alignment:
Q  352 ggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaatattaggaga-cgggttgtaatatcattatcttt 439  Q
    ||||||||||||||||||  ||| |||||||||||||||||| |||||||||||| || ||| ||  ||||||||||||||||||||||    
T  39664076 ggatcaaaatatataattcagcacctttgaagggagggttgtgtatgttttgaaacatgaggtgagggggttgtaatatcattatcttt 39663988  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 14537587 - 14537667
Alignment:
Q  326 gaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaa 406  Q
    |||| ||||||||| |||| | |||  |||||||||||||||||| |||||||| |||| || ||||| ||||||||||||    
T  14537587 gaaagttaacggaataatacatattgagatcaaaatatataatttagcatctttaaaggaagagttgtgtatgttttgaaa 14537667  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 14537051 - 14536966
Alignment:
Q  308 tttttaacaaggttaatcgaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgt 393  Q
    ||||||||||| | || | ||| |||| | |||||||||| |||  |||||||||||||||||  ||||||| |||||||||||||    
T  14537051 tttttaacaagatcaaacaaaagttaatgaaaaaatataagttcacatcaaaatatataatttaacatctttaaagggagggttgt 14536966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 405
Target Start/End: Complemental strand, 42767988 - 42767897
Alignment:
Q  315 caaggttaatcgaaaattaacggaaaaatataaattcggat-caaaatatataattttgcatctttgaagggagggttgtatatgttttgaa 405  Q
    |||||| |||||||| |||||||||||||||  ||| ||||  ||||||||||| |  | ||||||||||||| | |||||||| |||||||    
T  42767988 caaggtaaatcgaaagttaacggaaaaatatttatttggataaaaaatatataaatcagaatctttgaagggatgattgtatatattttgaa 42767897  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 446
Target Start/End: Original strand, 14536733 - 14536834
Alignment:
Q  346 aaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaatattaggagacg-ggttgtaatatcattatctttgaaga 444  Q
    ||||||| || |||||||||||||| |||||||| |||| || | ||| |||||||||||| || |   || | |||||| ||||||||||||||| |||    
T  14536733 aaattcgaattaaaatatataatttagcatctttaaaggaagagatgtgtatgttttgaaacataaaatgaagaggttgtgatatcattatctttggaga 14536832  T
Q  445 ta 446  Q
    ||    
T  14536833 ta 14536834  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 370
Target Start/End: Original strand, 11051701 - 11051733
Alignment:
Q  338 aaaaatataaattcggatcaaaatatataattt 370  Q
    ||||| |||||||||||||||||||||||||||    
T  11051701 aaaaacataaattcggatcaaaatatataattt 11051733  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 8376628 - 8376579
Alignment:
Q  331 ttaacggaaaaatataaattcggatcaaaatatataattttgcatctttg 380  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  8376628 ttaacggaaaaatatatattcggatcaaaatatataattttgcatttttg 8376579  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 3588503 - 3588417
Alignment:
Q  318 ggttaatcgaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaa 406  Q
    |||||| ||||| ||||||||||| |||||| |||||||||||| ||||||||||||| |||| || ||| || || ||||||||||||    
T  3588503 ggttaaacgaaagttaacggaaaa-tataaactcggatcaaaatctataattttgcat-tttggagagagagtggtgtatgttttgaaa 3588417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 2425567 - 2425619
Alignment:
Q  327 aaaattaacggaaaaatataaattcggatcaaaatatataattttgcatcttt 379  Q
    |||||||| ||||||||||||| ||  |||||||||||||||||  |||||||    
T  2425567 aaaattaagggaaaaatataaaatcatatcaaaatatataatttaacatcttt 2425619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 3593697 - 3593761
Alignment:
Q  342 atataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaa 406  Q
    |||||||||| ||| |||||||  ||||  |||||||| ||||||| ||||| ||||||||||||    
T  3593697 atataaattcagattaaaatattgaattaagcatctttaaagggagagttgtgtatgttttgaaa 3593761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 444
Target Start/End: Original strand, 32908746 - 32908851
Alignment:
Q  341 aatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaatattaggaga--cgggttgtaatatcattatctt 438  Q
    |||||||||||||||||||| ||||||||  ||  |||| || | || ||||| |||||||||||| || ||| ||   |||||||| ||||||||||||    
T  32908746 aatataaattcggatcaaaacatataattcagcgacttttaatgaagtgttgtgtatgttttgaaacatgaggggaagggggttgtattatcattatctt 32908845  T
Q  439 tgaaga 444  Q
    ||||||    
T  32908846 tgaaga 32908851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 19553062 - 19552983
Alignment:
Q  326 gaaaattaacggaaaaatataaattcggatcaaaatatataattttgcatctttgaagggagggttgtatatgttttgaaa 406  Q
    |||| |||||| || |||||||||||| | |||||||| |||||| |||| |||||||||| | |||| ||| ||||||||    
T  19553062 gaaatttaacgaaataatataaattcgaaccaaaatat-taatttagcatatttgaagggatgattgtgtatattttgaaa 19552983  T

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