View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_low_9 (Length: 457)
Name: NF3806_low_9
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_low_9 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 51 - 456
Target Start/End: Complemental strand, 23697188 - 23696783
Alignment:
| Q |
51 |
atagtattgccttcaattatttacatcacatctcttacgcaactattgcatttaggctggtgtcacaaatccattggaatatccaatactgctggaccaa |
150 |
Q |
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| T |
23697188 |
atagtattgccttcaattatttacatcacatcttttatgcaactattgcatttaggctggtgtcacaaatccattggaatatccaatactactggactaa |
23697089 |
T |
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| Q |
151 |
ttggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaacttgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaaga |
250 |
Q |
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| T |
23697088 |
ttggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaacttgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaaga |
23696989 |
T |
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| Q |
251 |
tcatagaattgttcccaaagaatgagtttgccttctattataaatcctacctgtcttttgcaacaacatttcacttaagtcatattttaaatatgttctc |
350 |
Q |
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| T |
23696988 |
tcatataattgttcccaaagaatgagtttgccttctattataaatcctacctttcttttgcaacatcatttcacttaagtcatattttaaatatgttctc |
23696889 |
T |
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| Q |
351 |
aacttaatctaaaacttttttggcaggatgatgatcttctggctattgagaatgttgaaactgcagaggtactatttagtttgctttcacttttgtgaaa |
450 |
Q |
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| T |
23696888 |
aacttaatctaaaacttttttggcaggatgatgatcttctggctattgagaatgttgaaactgcagaggtactgtttagtttgctttcgcttttgtgaaa |
23696789 |
T |
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| Q |
451 |
aatgtt |
456 |
Q |
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| T |
23696788 |
aatgtt |
23696783 |
T |
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Target: scaffold0028 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 96 - 276
Target Start/End: Complemental strand, 123362 - 123182
Alignment:
| Q |
96 |
ttgcatttaggctggtgtcacaaatccattggaatatccaatactgctggaccaattggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaact |
195 |
Q |
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| T |
123362 |
ttgcaattaggctggtgtcacaaatcctttggaatatccaattcatctggaccaattggaaaatagaaagttggtttgtaaagttaagtggcagccatct |
123263 |
T |
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| Q |
196 |
tgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagatcatagaattgttcccaaagaatgag |
276 |
Q |
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| T |
123262 |
tgggacagttgttcagttcaagcagtcaaggaagatgaaggtttgatagaaaagatcaaagaattgttcccaaaaaatgag |
123182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 276
Target Start/End: Complemental strand, 22078130 - 22077958
Alignment:
| Q |
103 |
taggctggtgtcacaaatccattggaatatccaatactgctggaccaattggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaacttgggaca |
202 |
Q |
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|||||||||||||||||||| ||||||| |||| || |||||||||||||||| ||| | | | |||||||| || ||||||||||||||||||| |
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| T |
22078130 |
taggctggtgtcacaaatcctctggaata-ccaacacacttggaccaattggaaaacagagagtttatttgtaaagttaaatggcagccaacttgggaca |
22078032 |
T |
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| Q |
203 |
gttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagatcatagaattgttcccaaagaatgag |
276 |
Q |
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| T |
22078031 |
gctgttcggttcaagcaatcaaggaagatgaaggtttaattgaaaagatcaaagcattgttcccaaaaaatgag |
22077958 |
T |
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