View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3807_low_1 (Length: 650)

Name: NF3807_low_1
Description: NF3807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3807_low_1
NF3807_low_1
[»] chr3 (13 HSPs)
chr3 (31-245)||(52624374-52624584)
chr3 (243-442)||(52616572-52616760)
chr3 (294-441)||(52624144-52624291)
chr3 (433-579)||(52623897-52624043)
chr3 (105-245)||(52616808-52616948)
chr3 (517-641)||(52602788-52602912)
chr3 (530-641)||(52623786-52623897)
chr3 (558-598)||(14078089-14078129)
chr3 (81-113)||(52617006-52617038)
chr3 (243-272)||(52624297-52624326)
chr3 (558-598)||(40799242-40799282)
chr3 (558-598)||(47406196-47406236)
chr3 (558-598)||(52283134-52283174)
[»] chr7 (5 HSPs)
chr7 (541-598)||(19414012-19414069)
chr7 (558-598)||(28623136-28623176)
chr7 (558-598)||(9710580-9710620)
chr7 (558-598)||(16557365-16557405)
chr7 (558-598)||(16608257-16608297)
[»] chr6 (4 HSPs)
chr6 (541-596)||(27167426-27167481)
chr6 (558-598)||(17380922-17380962)
chr6 (558-598)||(19833741-19833781)
chr6 (558-598)||(21234504-21234544)
[»] scaffold0300 (1 HSPs)
scaffold0300 (541-599)||(11415-11473)
[»] scaffold0273 (1 HSPs)
scaffold0273 (558-598)||(22363-22403)
[»] scaffold0032 (1 HSPs)
scaffold0032 (541-599)||(78704-78762)
[»] chr5 (1 HSPs)
chr5 (560-602)||(24163029-24163071)
[»] chr1 (2 HSPs)
chr1 (560-598)||(20908543-20908581)
chr1 (544-589)||(19474953-19474998)
[»] scaffold0578 (1 HSPs)
scaffold0578 (544-589)||(5807-5852)
[»] scaffold0205 (1 HSPs)
scaffold0205 (558-598)||(665-705)
[»] scaffold0064 (1 HSPs)
scaffold0064 (558-598)||(44587-44627)
[»] chr8 (2 HSPs)
chr8 (558-598)||(30422174-30422214)
chr8 (558-598)||(45539209-45539249)
[»] chr4 (2 HSPs)
chr4 (558-598)||(13576847-13576887)
chr4 (558-598)||(37436264-37436304)
[»] chr2 (1 HSPs)
chr2 (558-598)||(24843545-24843585)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 52624584 - 52624374
Alignment:
Q  31 gtcattactaaggatgacatgtaatgcagcaaacgaaataaactcagaatgaatgatacaagtgtaaaaatgataaataattaaagaattagaaacaggt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  52624584 gtcattactaaggatgacatgtaatgcagcaaacgaaataaactcagaatga----tacaagtgtaaaaatgataaataattaaagaattagaaacaggt 52624489  T
Q  131 gnnnnnnnccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaagattattgattgaaat 230  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624488 gtttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaagattattgattgaaat 52624389  T
Q  231 ggagttggattattg 245  Q
    |||||||| ||||||    
T  52624388 ggagttgggttattg 52624374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 243 - 442
Target Start/End: Complemental strand, 52616760 - 52616572
Alignment:
Q  243 ttgatctaagagacgtggggcctttttggggggaaggggagatgacaatacacatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  52616760 ttgatctaagagacgtggggcctttttggggggaaggggagatgaca-------tgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgat 52616668  T
Q  343 tttgttgtcttatccacatacaagcatctgtttgtttccagtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctataaattg 442  Q
    |||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52616667 tttgttgtcttatccacatacaagcagc----tgtttccagtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctttaaattg 52616572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 52624291 - 52624144
Alignment:
Q  294 acatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgattttgttgtcttatccacatacaagcatctgtttgtttccagtgtccatttc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52624291 acatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgattttgttgtcttatccacatacaagcagctgtttgtttccagtgtccatttc 52624192  T
Q  394 tttggaagtttgccatctttcctgtttacaattttaatcctataaatt 441  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52624191 tttggaagtttgccatctttcctgtttacaattttaatcctttaaatt 52624144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 433 - 579
Target Start/End: Complemental strand, 52624043 - 52623897
Alignment:
Q  433 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcagcagcaatacaaa 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52624043 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcatcagcaatacaaa 52623944  T
Q  533 agacatgaataaaagataaagaattagagagagaagaaagacacaaa 579  Q
    |||| | ||||||||||||||||||||||| ||||||||||||||||    
T  52623943 agacgtaaataaaagataaagaattagagaaagaagaaagacacaaa 52623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 52616948 - 52616808
Alignment:
Q  105 aaataattaaagaattagaaacaggtgnnnnnnnccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgtt 204  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52616948 aaataattaaagaattagaaacaggtgtttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgtt 52616849  T
Q  205 gctatctgaagattattgattgaaatggagttggattattg 245  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  52616848 gctatctgaagattattgattgaaatggagttgggttattg 52616808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 517 - 641
Target Start/End: Complemental strand, 52602912 - 52602788
Alignment:
Q  517 gcagcagcaatacaaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgt 616  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  52602912 gcagcagcaatacaaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagt 52602813  T
Q  617 acagtccctacgccaaaatgatgat 641  Q
     || |||| ||  ||||||||||||    
T  52602812 ccaatccccacatcaaaatgatgat 52602788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 530 - 641
Target Start/End: Complemental strand, 52623897 - 52623786
Alignment:
Q  530 aaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgtacagtccctacgc 629  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |||| ||      
T  52623897 aaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagttcattccccactt 52623798  T
Q  630 caaaatgatgat 641  Q
    ||||||||||||    
T  52623797 caaaatgatgat 52623786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 14078129 - 14078089
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  14078129 agagagagaagaaagacacaaagcaatttatagtggttcct 14078089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 52617038 - 52617006
Alignment:
Q  81 gaatgatacaagtgtaaaaatgataaataatta 113  Q
    |||||||||||||||||||||||||||||||||    
T  52617038 gaatgatacaagtgtaaaaatgataaataatta 52617006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 52624326 - 52624297
Alignment:
Q  243 ttgatctaagagacgtggggcctttttggg 272  Q
    ||||||||||||||||||||||||||||||    
T  52624326 ttgatctaagagacgtggggcctttttggg 52624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 40799242 - 40799282
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  40799242 agagagagaagaaagacacaaagcaatttatacaggttcct 40799282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 47406236 - 47406196
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  47406236 agagagagaagaaagacacaaagcaatttatacaggttcct 47406196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 52283134 - 52283174
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  52283134 agagagagaagaaagacacaaagcaatttatacaggttcct 52283174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 598
Target Start/End: Original strand, 19414012 - 19414069
Alignment:
Q  541 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    |||||||||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  19414012 ataaaagataaagagtcagagagagaagaaagacacaaaacaatttatactggttcct 19414069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 28623176 - 28623136
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  28623176 agagagagaagaaagacacaaagcaatttatataggttcct 28623136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 9710620 - 9710580
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  9710620 agagagagaagaaagacacaaagcaatttatacaggttcct 9710580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 16557405 - 16557365
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  16557405 agagagagaagaaagacacaaagcaatttatacaggttcct 16557365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 16608257 - 16608297
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  16608257 agagagagaagaaagacacaaagcaatttatacaggttcct 16608297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 596
Target Start/End: Complemental strand, 27167481 - 27167426
Alignment:
Q  541 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttc 596  Q
    ||||| |||||||| | |||||||||||| |||||||||| |||||||||||||||    
T  27167481 ataaacgataaagagtcagagagagaagacagacacaaagcaatttatattggttc 27167426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 17380922 - 17380962
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  17380922 agagagagaagaaagacacaaagcaatttatacaggttcct 17380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 19833781 - 19833741
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  19833781 agagagagaagaaagacacaaagcaatttataaaggttcct 19833741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 21234504 - 21234544
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  21234504 agagagagaagaaagacacaaagcaatttatacaggttcct 21234544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 11415 - 11473
Alignment:
Q  541 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 599  Q
    |||||||||||||| | ||||||||||||||||||| ||  |||||||| |||||||||    
T  11415 ataaaagataaagagtcagagagagaagaaagacactaaacaatttataatggttcctc 11473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 22363 - 22403
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  22363 agagaaagaagaaagacacaaagtaatttatagtggttcct 22403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 78704 - 78762
Alignment:
Q  541 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 599  Q
    |||||||||||||| |||| ||||||| |||||| ||||| |||||||| | |||||||    
T  78704 ataaaagataaagagttagggagagaacaaagacgcaaagcaatttataatagttcctc 78762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 24163029 - 24163071
Alignment:
Q  560 agagagaagaaagacacaaagtaatttatattggttcctctta 602  Q
    ||||||||||||||||||||  ||||| |||||||||||||||    
T  24163029 agagagaagaaagacacaaaacaatttgtattggttcctctta 24163071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 598
Target Start/End: Original strand, 20908543 - 20908581
Alignment:
Q  560 agagagaagaaagacacaaagtaatttatattggttcct 598  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20908543 agagagaagacagacacaaagcaatttatattggttcct 20908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 589
Target Start/End: Complemental strand, 19474998 - 19474953
Alignment:
Q  544 aaagataaagaattagagagagaagaaagacacaaagtaatttata 589  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  19474998 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 19474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 589
Target Start/End: Complemental strand, 5852 - 5807
Alignment:
Q  544 aaagataaagaattagagagagaagaaagacacaaagtaatttata 589  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  5852 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 705 - 665
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  705 agagagagaagaaagacacaaagcaatttatacaggttcct 665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 44627 - 44587
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  44627 agagagagaagaaagacacaaagcaatttatacaggttcct 44587  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 30422214 - 30422174
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  30422214 agagagagaagaaagacacaaagcaatttatacaggttcct 30422174  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 45539249 - 45539209
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  45539249 agagagagaagaaagacacaaagcaatttatacaggttcct 45539209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 13576887 - 13576847
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  13576887 agagagagaagaaagacacaaagcaatttatacaggttcct 13576847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 37436304 - 37436264
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  37436304 agagagagaagaaagacacaaagcaatttatacaggttcct 37436264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 24843545 - 24843585
Alignment:
Q  558 agagagagaagaaagacacaaagtaatttatattggttcct 598  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  24843545 agagagagaagaaggacacaaagaaatttatagtggttcct 24843585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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