View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3807_low_2 (Length: 234)
Name: NF3807_low_2
Description: NF3807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3807_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 41075161 - 41075379
Alignment:
| Q |
1 |
ttattggtaccatgaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacga |
100 |
Q |
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| T |
41075161 |
ttattggtaccataaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacga |
41075260 |
T |
|
| Q |
101 |
tggaggtgatgctagtgtatcagagttctcctggttccttttggactatcttaagggtctggtctaagtggt----ggaatacttatgtgtgtattttgt |
196 |
Q |
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| T |
41075261 |
tggaggtgatgctagtgtatcagagttctcctgattccttttggactatcttaagtgtctggtctaagtggtgaaaggaatacttatgtgtgtattttgt |
41075360 |
T |
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| Q |
197 |
ttagatggggtgctagcct |
215 |
Q |
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|||||||||||| |||||| |
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| T |
41075361 |
ttagatggggtgttagcct |
41075379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 41086649 - 41086860
Alignment:
| Q |
5 |
tggtaccatgaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatgga |
104 |
Q |
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| T |
41086649 |
tggtaccatgaaggcaaatttgattggtatccggttattgattggttgtttttttgagtatacatgagtgaggtacctattcctctgaattcataatgga |
41086748 |
T |
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| Q |
105 |
ggtgatgctagtgtatcagagttctcctggttcc-ttttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtattttgtttagatg |
203 |
Q |
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| T |
41086749 |
ggtgttgctagtgtattagagttctcctggttcctttttggactattgtaagggtctggtgtaaatggtggaatactgatgtgtgtattttgtttacttg |
41086848 |
T |
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| Q |
204 |
gggtgctagcct |
215 |
Q |
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| T |
41086849 |
gggtgctagcct |
41086860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 48297241 - 48297424
Alignment:
| Q |
15 |
aaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgcta |
114 |
Q |
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|||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |
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| T |
48297241 |
aaggaaaatttgattggtatcctattattgattggctgttttttggagtatacatgattgaggtacctattcctatgaattcatgatggaggtgatgcta |
48297340 |
T |
|
| Q |
115 |
gtgtatcagagttctcctggttcctt-ttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtattttgtt |
197 |
Q |
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|||||| ||||||||||| ||||||| ||||| ||| ||||||||| || |||| |||||||||||||||||||||||||||| |
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| T |
48297341 |
gtgtattagagttctcctagttccttcctggaccatcgtaagggtctagtgtaagcggtggaatacttatgtgtgtattttgtt |
48297424 |
T |
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