View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3808_high_1 (Length: 413)
Name: NF3808_high_1
Description: NF3808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3808_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 35850436 - 35850060
Alignment:
| Q |
1 |
atatagtttaccttgaattgatgggctttgaatgtgaatgtgaatgtgaatgtgataaggatgagggatgcaggagactgtggaaattataactgtgctg |
100 |
Q |
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| T |
35850436 |
atatagtttaccttgaattgatgggctttgaatgtgaatgtgaatgtgaatgtgataaggatgagggatgcaggagactgtggaaattataactgtgctg |
35850337 |
T |
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| Q |
101 |
gttgtaattagtttctagaacaattccaccatttgccatcttgaaatgttgatgaggtatcatggattgatgggctacatggtgagaaatggaacctaat |
200 |
Q |
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| T |
35850336 |
gttgtaattagtttctagaacaattccaccatttgccatcttgaaatgttgatgaggtatcatggattgatgggctacatggtgagaaatggaacctaat |
35850237 |
T |
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| Q |
201 |
tcatgggttgatctgtgtgttggacttagtactgcaaagtaaatatgaataaatgtcaaaataaacaaaatcggctaaaataaagttacccctatgccct |
300 |
Q |
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| T |
35850236 |
tcatgggttgatctgtgtgttggacttagtactgcaaagtaaatatgaataaatgtcaaaataaacaaaatcggctaaaataaagttacccctatgccct |
35850137 |
T |
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| Q |
301 |
tgtaatactttcattttgaacacacagtacannnnnnnnnaattagacctactctcttctgtaattactaaaatataat |
379 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
35850136 |
tgtaatactttcattttgaacacacagtaca--tttttttaattagacctactctcttctgtaattactaatatataat |
35850060 |
T |
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