View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3808_high_7 (Length: 363)
Name: NF3808_high_7
Description: NF3808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3808_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 34899627 - 34899975
Alignment:
| Q |
14 |
aggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagataggcaag |
113 |
Q |
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| T |
34899627 |
aggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagataggcaag |
34899725 |
T |
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| Q |
114 |
agataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatgga |
213 |
Q |
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| T |
34899726 |
agataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatgga |
34899825 |
T |
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| Q |
214 |
aggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtg |
313 |
Q |
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| T |
34899826 |
aggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtg |
34899925 |
T |
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| Q |
314 |
tttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
363 |
Q |
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| T |
34899926 |
tttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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