View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3808_high_9 (Length: 356)
Name: NF3808_high_9
Description: NF3808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3808_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 343
Target Start/End: Complemental strand, 19102722 - 19102382
Alignment:
| Q |
3 |
cggaatggctgcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggctgcctgttgtggtgtc |
102 |
Q |
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| T |
19102722 |
cggaatggcagcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggatgcctattgtggtgtc |
19102623 |
T |
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| Q |
103 |
tgttgttgcgtggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatgttcag |
202 |
Q |
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| T |
19102622 |
tgttgttgcatggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcggaccccaaattttgatgttcag |
19102523 |
T |
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| Q |
203 |
atggtacattcacagtggccgagggtgattgctcatccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgtaatggt |
302 |
Q |
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| T |
19102522 |
atggtacattcacagtgcccgagggtgattgctcatccactgcaataatttcgtgattcactgcctcttgtggaatatccttttgctgtaccgtaatggt |
19102423 |
T |
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| Q |
303 |
atgtgcctctgcttcagtaattactgggtccttatttgtct |
343 |
Q |
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| T |
19102422 |
atgtgcctctgcttcagtaattactgggtccttatttgtct |
19102382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 36030780 - 36031105
Alignment:
| Q |
1 |
accggaatggctgcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggctgcctgttgtggtg |
100 |
Q |
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| T |
36030780 |
accggaatggcaacattgtcaatagattgatgtacttctgccacctccaacaacacaacttcatgaggaataggcgcagcagtggcttcttgttgtggtg |
36030879 |
T |
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| Q |
101 |
tctgttgttgcgtggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatgttc |
200 |
Q |
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||| ||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36030880 |
tctattgttgcgtggtttccgagggaggtgggttgtttgtatgctccaagtgatgtgttgtatctccttcaatggtgtcggaccccaaattttgatgttc |
36030979 |
T |
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| Q |
201 |
agatggtacattcacagtggccgagggtgattgctcatccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgtaatg |
300 |
Q |
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| T |
36030980 |
agatggtaccttcacagtggccgagggtgattgctcctccactgcaataattccgtgattcactgcctcctgtggaatatcttgctgctgtatcgtaatg |
36031079 |
T |
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| Q |
301 |
gtatgtgcctctgcttcagtaattac |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36031080 |
gtatgtgcctctgcttcagtaattac |
36031105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 203 - 353
Target Start/End: Original strand, 11868789 - 11868942
Alignment:
| Q |
203 |
atggtacattcacagtggccgagggtgattgctcat---ccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgtaat |
299 |
Q |
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||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||| | ||||||||||||||| |
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| T |
11868789 |
atggtacattcgcagtggccgagcgtgattgctcctgttccactgcaataattttgtgattcactgcctcttatggaatatcttgttgttgtaccgtaat |
11868888 |
T |
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| Q |
300 |
ggtatgtgcctctgcttcagtaattactgggtccttatttgtctgtgatgctgc |
353 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||| | |||||| |
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| T |
11868889 |
ggtatgtgcctctgcttcagcaattaccgggtccttatttgtctgaggtgctgc |
11868942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 21164035 - 21164084
Alignment:
| Q |
145 |
tccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttg |
194 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||||| ||||| |
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| T |
21164035 |
tccaagtgctgccctatatctccttcaatggtgtcggaccccaagttttg |
21164084 |
T |
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