View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3809_low_1 (Length: 530)
Name: NF3809_low_1
Description: NF3809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3809_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 54 - 511
Target Start/End: Complemental strand, 6735568 - 6735111
Alignment:
| Q |
54 |
gaagcagaatgaacagtgttgtaccattaatcaaacattaacttaaggggtgcaaattttaaattttagacagcaaagacaaatcaaacttcaaattcaa |
153 |
Q |
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|||||||||||| |||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6735568 |
gaagcagaatgatcagtcttgtttcattaatcgaacattaacttaaggagtgcaaattttaaattttagacagcaaagccaaatcaaacttcaaattcaa |
6735469 |
T |
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| Q |
154 |
atatgtaaaccaatcacagtactctctactcagtgaggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtag |
253 |
Q |
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|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6735468 |
gtatgaaaaccaatcacagtagccactactcagtgaggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtag |
6735369 |
T |
|
| Q |
254 |
gttctcaattgcagcatatcctctagcattctcatacttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaac |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6735368 |
gttctcaattgcagcatatcctctagcattctcatacttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaac |
6735269 |
T |
|
| Q |
354 |
agacttatagtgtcatcagctccatcatgatgctcagccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagt |
453 |
Q |
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| T |
6735268 |
agacttatagtgtcatcagctccatcatgatgctcagccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagt |
6735169 |
T |
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| Q |
454 |
aaaacccttgtgctcttcctatcacagaagaatctagctcatgttcttctgttaactg |
511 |
Q |
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| T |
6735168 |
aaaacccctgtgctcttcctatcacagaagaatccagctcatgctcttctgttaactg |
6735111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6735624 - 6735593
Alignment:
| Q |
1 |
aacagaatgtaaaatgcaaataggcattatct |
32 |
Q |
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| T |
6735624 |
aacagaatgtaaaatgcaaataggcattatct |
6735593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 472
Target Start/End: Original strand, 52199609 - 52199892
Alignment:
| Q |
189 |
aggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtaggttctcaattgcagcatatcctctagcattctcat |
288 |
Q |
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||||||||| |||||| | ||||||||| | ||||| |||||||| || ||||| ||||| || |||||| || |||||||| || |||||||| | |
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| T |
52199609 |
aggtagatatcgaaatggatgatggtgtcgactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgt |
52199708 |
T |
|
| Q |
289 |
acttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaacagacttatagtgtcatcagctccatcatgatgctc |
388 |
Q |
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|||| ||| |||||||||||||||| | ||||||| |||| || ||||| |||| ||||||| |||||| ||||||| | |||||||||| | |
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| T |
52199709 |
acttaccactcccaccaatcactgcaacttcagatttcagcgatgctgtcctgtgaactccaaacaagcttatactgtcatccacgccatcatgatcatt |
52199808 |
T |
|
| Q |
389 |
agccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagtaaaacccttgtgctcttcc |
472 |
Q |
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| T |
52199809 |
acctccatgcagaaacaccgtcatcacaacactttgactagtaccatccaatgagctagccgtgtagaacccttgtgctcttcc |
52199892 |
T |
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