View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_high_12 (Length: 305)
Name: NF3810_high_12
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 8985773 - 8986075
Alignment:
| Q |
1 |
tatggaagcatagaaataatatgatttggat--tgataaagttaatgaaaccaatgtggtggacagagcaaaacatatgcttgaccaatggttggcaact |
98 |
Q |
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| T |
8985773 |
tatggaagcaaagaaataatatgatttggaaagtgataaagttaatgaagccaatgtggtggacagagcaaaacatatgcttgaccagtggttggcaact |
8985872 |
T |
|
| Q |
99 |
caaatgg-----aattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaataagggatatttaaatgtaatgtagatgcat |
193 |
Q |
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| T |
8985873 |
caaatggtacacaattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaacaaatgatatttaaatgtaatgtagatgcat |
8985972 |
T |
|
| Q |
194 |
ctttttccaaagaggataaaaaagttgggatcggtatgtgcattcc-agattatacatgaacttttgttttggctagaacataatggtttagtccaatct |
292 |
Q |
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| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |||| | |
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| T |
8985973 |
cctttttcaaagaggataacaaagttgggatcggtatgtgcattccaagattatacataaacttttgctttggctagaacataatggtttagttcaattt |
8986072 |
T |
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| Q |
293 |
gtg |
295 |
Q |
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||| |
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| T |
8986073 |
gtg |
8986075 |
T |
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