View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_high_19 (Length: 213)
Name: NF3810_high_19
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19932036 - 19931839
Alignment:
| Q |
1 |
aagaggaagcaatcttgttttgatttcttcgatgacaagttccatagcgtaggaacgaatcactacgctaccgagttcaagagatgccatttttcgttga |
100 |
Q |
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| T |
19932036 |
aagaggaagcaatcttgttttgatttcttcgatgacaagttccatagcgtaggaacgaatcactacgctaccgagttcaagagatgccatttttcgttga |
19931937 |
T |
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| Q |
101 |
aacttccacgaatggccgtcaacgttgaagataccacggccaagaagatcaccaaggattgtagaaaattgtttacctttagggtaattgttgaaatt |
198 |
Q |
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| T |
19931936 |
aacttccacgaatggccgtcaacgttgaagataccacggccaagaagatcaccaaggattgtagagaattgtttacctttagggtaattgttgaaatt |
19931839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 36170509 - 36170622
Alignment:
| Q |
73 |
gagttcaagagatgccatttttcgttgaaacttccacgaatggccgtcaacgttgaagataccacggccaagaagatcaccaaggattgtagaaaattgt |
172 |
Q |
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|||||||||| ||||||||| |||||||| ||||| ||| ||||||||||| || || ||| |||||||||||||||||||||||||| ||| || |
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| T |
36170509 |
gagttcaagacttgccattttacgttgaaagttccatgaaacaccgtcaacgttaaatattccattaccaagaagatcaccaaggattgtagagaatggt |
36170608 |
T |
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| Q |
173 |
ttacctttagggta |
186 |
Q |
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| T |
36170609 |
tttccttttgggta |
36170622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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