View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3810_high_2 (Length: 615)

Name: NF3810_high_2
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3810_high_2
NF3810_high_2
[»] chr8 (2 HSPs)
chr8 (185-615)||(2757077-2757515)
chr8 (65-144)||(2757552-2757631)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 185 - 615
Target Start/End: Complemental strand, 2757515 - 2757077
Alignment:
Q  185 ttaattataaaaaatgattttgtttccataagctactcaaaaagcttttcatataaagcaattttaatattagtttttcctcaaaagtttctatcctcan 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2757515 ttaattataaaaaatgattttgtttccataagctactcaaaaagcttttcatataaagcaattttaatattagtttttcctcaaaagtttctatcctcat 2757416  T
Q  285 nnnnnnnaaaccggtaagaaactgaggaaaacttctgacagtgactgttttttaaataaatatgttttttcacnnnnnnnnnnntgtaacaaaaaggctc 384  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  2757415 tttttttaaaccggtaagaaactgaggaaaacttctgacagtgactgttttttaaataaatatgttttttcacaaaaaaaaaa-tgtaacaaaaaggctc 2757317  T
Q  385 tactgatctaaaatgaaagtatggaaactttttattttt---------atgaaatcttagcgcgtaagattttgaacttatagtaaaaatttgtctttgt 475  Q
    ||||||||| |||||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2757316 tactgatcttaaatgaaagtatggaaactttttattttttttatttttataaaatcttagcgcgtaagattttgaacttatagtaaaaatttgtctttgt 2757217  T
Q  476 ataaaaaataaattaatggattttgtctttatttgagttgtatcaattaatgtaagtaagtactatatcaagaaattttttcctcnnnnnnncttttttg 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  2757216 ataaaaaataaattaatggattttgtctttatttgagttgtatcaattaatgtaagtaagtactatatcaagaaattttttcctcaaaaaaacttttttg 2757117  T
Q  576 actacaaaatggaccaatcacttgtattatataaagttag 615  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2757116 actacaaaatggaccaatcacttgtattatataaagttag 2757077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 2757631 - 2757552
Alignment:
Q  65 gtgattttgttatacaatagtttaaattattatttaaaaaactagaagttattttgtgtatgtctatcataacgaaaatg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2757631 gtgattttgttatacaatagtttaaattattatttaaaaaactagaagttattttgtgtatgtctatcataacgaaaatg 2757552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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