View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3810_high_8 (Length: 391)
Name: NF3810_high_8
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 41370661 - 41370930
Alignment:
| Q |
16 |
tcaactccttcaacctttatatttttaatcggtttgaattactcaacctctttttatttaactctttggatacaaaggaaaagatgggataaagatggaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41370661 |
tcaactccttcaacctttatatttttaatcggtttaaattactcaacctctttttatttaactctttggatacaaaggaaaagatgggataaagatggaa |
41370760 |
T |
|
| Q |
116 |
ttgcagcaaaacggtcgattaataatgatttggttaaaaatattcttccttcacaaaacctagtcctttttgtgcgtttatctcccaacttcaaacccta |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
41370761 |
tggcagcaaaacggtcgattaataatgatttggttaaaaatattcttccttcacaaaacctagttctttttctgcgtttatctcccaacttcaaacccta |
41370860 |
T |
|
| Q |
216 |
aactcctaacttttgttttattatttcattgattttccgattaataaaattattctagtaaaataaaggg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41370861 |
aactcctaacttttgttttattatttcattgattttccgattaataaaattattctagtaaaataaaggg |
41370930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 383
Target Start/End: Original strand, 41370993 - 41371028
Alignment:
| Q |
348 |
atcagcatcaatcgtctttttcacgtcagtataatc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41370993 |
atcagcatcaatcgtctttttcacgtcagtaaaatc |
41371028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University