View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3810_low_10 (Length: 366)

Name: NF3810_low_10
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3810_low_10
NF3810_low_10
[»] chr7 (26 HSPs)
chr7 (9-349)||(44893643-44893985)
chr7 (14-224)||(42160864-42161073)
chr7 (21-202)||(33910184-33910365)
chr7 (17-187)||(18015359-18015528)
chr7 (14-111)||(12251141-12251239)
chr7 (14-111)||(33418970-33419068)
chr7 (14-202)||(6379848-6380035)
chr7 (14-202)||(11672699-11672891)
chr7 (14-202)||(36796135-36796322)
chr7 (47-202)||(4100104-4100261)
chr7 (16-111)||(7636177-7636274)
chr7 (14-111)||(41852154-41852252)
chr7 (22-111)||(3799616-3799706)
chr7 (19-111)||(46221556-46221649)
chr7 (14-107)||(773740-773835)
chr7 (14-111)||(28589998-28590096)
chr7 (14-111)||(41908289-41908388)
chr7 (14-108)||(21145468-21145562)
chr7 (20-109)||(42312126-42312219)
chr7 (16-56)||(32956889-32956929)
chr7 (151-209)||(773637-773695)
chr7 (151-209)||(29730846-29730904)
chr7 (151-209)||(29742043-29742101)
chr7 (13-101)||(44876020-44876111)
chr7 (26-111)||(26633486-26633574)
chr7 (26-111)||(36438204-36438292)
[»] chr2 (27 HSPs)
chr2 (14-202)||(4856106-4856293)
chr2 (14-202)||(26151511-26151698)
chr2 (14-111)||(45619089-45619186)
chr2 (14-202)||(7993746-7993932)
chr2 (14-202)||(18676073-18676261)
chr2 (14-202)||(41096303-41096488)
chr2 (14-111)||(42411412-42411509)
chr2 (14-199)||(13020536-13020719)
chr2 (14-198)||(36481507-36481691)
chr2 (14-202)||(6530772-6530962)
chr2 (18-111)||(42759610-42759703)
chr2 (9-111)||(12269532-12269635)
chr2 (14-107)||(25222436-25222529)
chr2 (14-202)||(45042503-45042691)
chr2 (14-111)||(2063918-2064016)
chr2 (42-110)||(34061723-34061791)
chr2 (15-86)||(19367298-19367369)
chr2 (17-107)||(31273023-31273115)
chr2 (16-109)||(27302392-27302486)
chr2 (146-202)||(34061629-34061685)
chr2 (151-202)||(17117409-17117460)
chr2 (11-41)||(13001746-13001776)
chr2 (17-111)||(17117498-17117594)
chr2 (23-111)||(1226120-1226211)
chr2 (146-202)||(19367188-19367244)
chr2 (146-202)||(25222569-25222625)
chr2 (146-202)||(45619220-45619276)
[»] chr6 (15 HSPs)
chr6 (14-202)||(2618468-2618653)
chr6 (14-202)||(3514612-3514801)
chr6 (14-110)||(31258427-31258523)
chr6 (14-111)||(7525021-7525117)
chr6 (14-106)||(57801-57892)
chr6 (17-202)||(22503859-22504044)
chr6 (14-107)||(6360872-6360965)
chr6 (14-109)||(12614574-12614667)
chr6 (14-91)||(6754319-6754395)
chr6 (14-85)||(29149516-29149587)
chr6 (14-202)||(29401253-29401439)
chr6 (27-111)||(11088694-11088782)
chr6 (151-202)||(29308231-29308282)
chr6 (146-202)||(31258335-31258392)
chr6 (146-202)||(6361007-6361063)
[»] chr1 (33 HSPs)
chr1 (16-202)||(28885434-28885620)
chr1 (14-202)||(30899771-30899965)
chr1 (11-202)||(51109862-51110055)
chr1 (14-200)||(14084463-14084651)
chr1 (14-109)||(6150835-6150930)
chr1 (14-202)||(17487042-17487234)
chr1 (14-111)||(52240390-52240487)
chr1 (14-110)||(20470725-20470821)
chr1 (14-202)||(48722129-48722321)
chr1 (14-111)||(50552608-50552705)
chr1 (14-200)||(30004673-30004859)
chr1 (14-111)||(10109833-10109934)
chr1 (11-110)||(18127792-18127891)
chr1 (16-111)||(25930718-25930813)
chr1 (14-91)||(120-198)
chr1 (47-189)||(33124417-33124559)
chr1 (14-110)||(20905140-20905237)
chr1 (14-111)||(52055664-52055762)
chr1 (14-111)||(29207952-29208049)
chr1 (14-111)||(50371246-50371345)
chr1 (24-88)||(6333396-6333460)
chr1 (27-109)||(37873611-37873697)
chr1 (14-111)||(1269662-1269763)
chr1 (45-111)||(26486228-26486295)
chr1 (16-107)||(15441403-15441495)
chr1 (151-200)||(12971655-12971704)
chr1 (146-209)||(254-317)
chr1 (26-69)||(24556929-24556972)
chr1 (153-200)||(50371690-50371737)
chr1 (146-202)||(20470857-20470914)
chr1 (24-111)||(27703387-27703472)
chr1 (146-202)||(20905049-20905105)
chr1 (151-195)||(48660266-48660310)
[»] chr4 (22 HSPs)
chr4 (17-202)||(27632514-27632699)
chr4 (11-202)||(19661489-19661681)
chr4 (14-209)||(53011825-53012022)
chr4 (14-111)||(28463442-28463539)
chr4 (16-202)||(11681505-11681691)
chr4 (16-202)||(11689784-11689970)
chr4 (14-107)||(41038363-41038455)
chr4 (14-109)||(23426022-23426117)
chr4 (14-111)||(32130644-32130741)
chr4 (14-200)||(44478153-44478338)
chr4 (16-107)||(16887841-16887932)
chr4 (14-209)||(23256706-23256904)
chr4 (14-111)||(29221475-29221572)
chr4 (17-84)||(29579996-29580063)
chr4 (14-109)||(5545441-5545538)
chr4 (14-87)||(16072711-16072785)
chr4 (13-66)||(51066324-51066377)
chr4 (146-202)||(41038496-41038552)
chr4 (147-202)||(29221387-29221442)
chr4 (14-111)||(26328883-26328984)
chr4 (169-209)||(26328789-26328829)
chr4 (28-108)||(35653836-35653919)
[»] scaffold0181 (1 HSPs)
scaffold0181 (11-202)||(16897-17086)
[»] chr8 (22 HSPs)
chr8 (14-111)||(43926177-43926274)
chr8 (28-202)||(1004184-1004358)
chr8 (14-202)||(18420369-18420560)
chr8 (23-202)||(3445657-3445833)
chr8 (14-199)||(7858198-7858382)
chr8 (14-111)||(13585412-13585509)
chr8 (14-111)||(43967924-43968021)
chr8 (39-202)||(42951558-42951721)
chr8 (14-111)||(3471713-3471809)
chr8 (14-202)||(18112230-18112424)
chr8 (14-107)||(32098034-32098130)
chr8 (17-111)||(34523806-34523900)
chr8 (14-75)||(44664936-44664997)
chr8 (26-111)||(3628600-3628688)
chr8 (146-202)||(13585550-13585606)
chr8 (146-202)||(44664367-44664423)
chr8 (151-202)||(34523718-34523769)
chr8 (151-200)||(30915052-30915099)
chr8 (26-111)||(36515008-36515096)
chr8 (151-195)||(8341177-8341221)
chr8 (146-202)||(43926089-43926145)
chr8 (71-111)||(44664460-44664500)
[»] chr5 (19 HSPs)
chr5 (14-111)||(26312101-26312198)
chr5 (14-202)||(37046894-37047083)
chr5 (14-111)||(12661422-12661518)
chr5 (14-202)||(13474743-13474931)
chr5 (14-111)||(26377628-26377724)
chr5 (14-111)||(13423977-13424075)
chr5 (17-111)||(19099168-19099262)
chr5 (14-109)||(13656323-13656418)
chr5 (14-108)||(27351461-27351557)
chr5 (14-109)||(40779302-40779399)
chr5 (151-209)||(931618-931676)
chr5 (16-106)||(8379301-8379393)
chr5 (151-202)||(43511870-43511921)
chr5 (16-58)||(40956427-40956469)
chr5 (169-202)||(13656478-13656511)
chr5 (28-108)||(7390257-7390340)
chr5 (14-103)||(23069336-23069427)
chr5 (154-202)||(26377539-26377587)
chr5 (71-111)||(36718484-36718524)
[»] scaffold0126 (1 HSPs)
scaffold0126 (14-202)||(16823-17011)
[»] chr3 (29 HSPs)
chr3 (14-200)||(27110636-27110823)
chr3 (14-202)||(6715552-6715739)
chr3 (17-107)||(27729627-27729717)
chr3 (14-110)||(46791552-46791648)
chr3 (14-109)||(8364286-8364381)
chr3 (17-218)||(51939302-51939503)
chr3 (17-109)||(18408307-18408399)
chr3 (14-206)||(21784540-21784734)
chr3 (16-109)||(24252735-24252829)
chr3 (14-207)||(23164330-23164523)
chr3 (14-209)||(52654879-52655074)
chr3 (14-107)||(23067583-23067675)
chr3 (14-107)||(28132594-28132687)
chr3 (14-107)||(13401573-13401666)
chr3 (14-111)||(29387607-29387705)
chr3 (14-101)||(41706916-41707003)
chr3 (14-111)||(25598936-25599038)
chr3 (11-107)||(54430662-54430760)
chr3 (14-111)||(20762162-20762260)
chr3 (151-202)||(28132498-28132549)
chr3 (26-111)||(7767189-7767277)
chr3 (45-107)||(19965735-19965799)
chr3 (146-202)||(46791460-46791514)
chr3 (14-111)||(21596446-21596545)
chr3 (146-202)||(27729534-27729590)
chr3 (151-202)||(43905617-43905668)
chr3 (146-199)||(8364417-8364470)
chr3 (26-111)||(46904865-46904953)
chr3 (14-54)||(1649744-1649784)
[»] scaffold0035 (1 HSPs)
scaffold0035 (14-111)||(22659-22756)
[»] scaffold0564 (1 HSPs)
scaffold0564 (14-202)||(1174-1362)
[»] scaffold0100 (2 HSPs)
scaffold0100 (14-92)||(46047-46126)
scaffold0100 (146-202)||(45939-45995)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 44893985 - 44893643
Alignment:
Q  9 agcaaaggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattc 108  Q
    ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||     
T  44893985 agcaaaggagttacaaattcaaacgacaccgttacataaatttcacctctttcacttaattttttttaattcctttcatgcttacaacttcttctgatta 44893886  T
Q  109 tgannnnnnnnn-aatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagagga 207  Q
    |||          ||||||||||||||||||       |||||||||||||||||| || |||||||||| ||||||| ||| ||||||||||||  |      
T  44893885 tgattttttttttaatgaaatttaactacataaaaaaattacgttttattttattaaggatctattttaaaaagagagtcgagcctcctatttcacggag 44893786  T
Q  208 accgccatggtccgggatctcacaccatcaaatgtgtctcgtctcatctttattacttattatactttttcaaacattattttgcgcctttcttaaaaga 307  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44893785 acggccctggtccgggatctcacaccatcaaatgtgtctcgtctcatctttattaattattatactttttcaaacattattttgcgcctttcttaaaaga 44893686  T
Q  308 aatctatatgctcccaaatggagagaataccc-acattctaat 349  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  44893685 aatctatatgctcccaaatggagagaatacccaacattctaat 44893643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 42161073 - 42160864
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||||||      
T  42161073 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttattctgattctga-t 42160975  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaaccgcc 213  Q
           ||||||||||||||||||       ||||||||||||||| || || |||||||||| ||||||||  |||||||||||||| ||| || |||    
T  42160974 tttttttaatgaaatttaactacataaagatattacgttttattttactaaggatctattttaaaaagagagcataacctcctatttcacagggacggcc 42160875  T
Q  214 atggtccggga 224  Q
     ||||||||||    
T  42160874 ctggtccggga 42160864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 33910184 - 33910365
Alignment:
Q  21 acaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnnnnnn 120  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || || |||| |||||||             
T  33910184 acaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttattcttattctgattttttttt 33910283  T
Q  121 aatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||| |||| |||||        ||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||    
T  33910284 aatgaagtttagctacacaaaaatattacgttttattttactaggggcctattttaaaaagagagccgagcctcctatttca 33910365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 18015528 - 18015359
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnn 116  Q
    |||||||||| |||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||         
T  18015528 agtgacaaattcaaacgacaccgtttgataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctaattctga-tttt 18015430  T
Q  117 nnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagcc 187  Q
        ||||||||||| |||||        |||||||||||||||||||||| ||||||||| |||||||||    
T  18015429 ttttaatgaaatttagctacacaaaaaaattacgttttattttattaggggcctattttaaaaagagagcc 18015359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 12251239 - 12251141
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||    
T  12251239 aggagtgacaaatccaaacgtcaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctga 12251141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 33419068 - 33418970
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcactta-attctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||  || ||||||||||| |||||||||| ||||||||||||||||||    
T  33419068 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttattttttttttaattccattcatgtttagaacttcttctgattctga 33418970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 6380035 - 6379848
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||| |||| || |||||  ||||||||      
T  6380035 aggagtgacaaatccaaacgacattgttggataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttctttcgattctga-t 6379937  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           |||||| ||||||||||        ||||||||||||||| || ||| ||||||||| ||| ||||||| |||| |||||||    
T  6379936 tttttttaatgaagtttaactacacaaaaaaattacgttttattttactatgggcctattttaaaaagtgagccgagcctcatatttca 6379848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 11672699 - 11672891
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga-- 111  Q
    |||||||||||||| ||||||||  |||  |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |  ||||||      
T  11672699 aggagtgacaaatctaaacgacatcgtttgataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttatagttctgatt 11672798  T
Q  112 -nnnnnnnnnaatgaaatttaactaca-tnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
              |||||||||||||||||         ||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||    
T  11672799 ttttttttttaatgaaatttaactacacaaaaaaatttacgttttattttactaggggtctattttaaaaagagaaccgaacctccaatttca 11672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 36796322 - 36796135
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||     
T  36796322 aggagtgacaaatcaaaacgacaccgttagataaatttcacctctttcacttaatttttttttaattcatttc-tgtttagaacttcttctgattctga- 36796225  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
            ||||| |||||||||||        |||| |||||||||| ||||| |||||||||| |||||||| ||  |||||||||||    
T  36796224 ttttttttaatgatatttaactacacaaaaaaattacattttattttactagggatctattttaaaaagagagctgagtctcctatttca 36796135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 4100104 - 4100261
Alignment:
Q  47 aatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga-nnnnnnnnnaatgaaa-tttaactacatnnnnnn 144  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||          ||||||| ||| ||||||           
T  4100104 aatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattctttttttaatgaaattttgactacaaaaaaaa 4100203  T
Q  145 nttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
     ||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||    
T  4100204 attacgttttattttactagagatctattttaaaaagagagccgaacctcctatttca 4100261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 7636274 - 7636177
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa--ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||| ||||||| || |||| ||||||||||||| ||||||||||  || |||||||||||||||||||||| || || ||||||||||||    
T  7636274 gagtgacaaattcaaacgataccgttagataaatttcacctttttcacttaattttttttttaattcctttcatgtttagaagttgttctgattctga 7636177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41852252 - 41852154
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| |||||||||| |||| |||||||||||  ||||||||||||||| |||||| ||| ||| | |||||||| |||||||||||||||    
T  41852252 aggagtgacaaattcaaacgacaccgttagataaatttcacatctctttcacttaatt-tttttatttcgtttgacgtttaaaagttcttctgattctga 41852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 3799706 - 3799616
Alignment:
Q  22 caaatccaaacgacactgttacataaatttcacctct--ttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||| ||||  ||||||||||||||  ||||||||||| |||||| ||| ||||||||||| || |||||||||||||||    
T  3799706 caaatccaaacgacaccgttaggtaaatttcacctctctttcacttaatt-tttttatttcgtttcatgtttagaagttcttctgattctga 3799616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 46221649 - 46221556
Alignment:
Q  19 tgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| || |  |||| |||||||| ||||||||||||||| || ||||||||| |||||||||||| || ||||||| |||||||    
T  46221649 tgacaaatccaaatgatatcgttagataaattttacctctttcacttaatttttttttaatttctttcatgtttagaagttcttctaattctga 46221556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 773835 - 773740
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||||| |||||| |||||||| | ||||  ||||||||||  ||||||||||||||| |||||| ||| ||||||||||| || |||||||||||    
T  773835 aggagtcacaaattcaaacgacgccgttaggtaaatttcacatctctttcacttaattttttttatttcgtttcatgtttagaagttcttctgatt 773740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 28590096 - 28589998
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||||||| |||||  |||| |||||  ||||| ||||||||| ||| || ||| ||||||||||| || |||||||||||||||    
T  28590096 aggagtgacaaatccaaacgacattgttaggtaaaattcacctctcttccacttaatt-tttctatttcatttcatgtttagaaattcttctgattctga 28589998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 41908289 - 41908388
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctc--tttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||| |||||||||| |  |||| ||||||||||||||  |||||||||||| |||||| ||  ||||||||||| || || ||||||||||||    
T  41908289 aggagtgacagatccaaacgatatcgttagataaatttcacctctttttcacttaattttttttattttgtttcatgtttagaagtttttctgattctga 41908388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 21145468 - 21145562
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacct--ctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattc 108  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||  ||||||||||||| |||||| ||| |||||||| ||||| ||||||| ||||    
T  21145468 aggagtgacaaattcaaacgacac-gttaggtaaatttcacctccctttcacttaatt-tttttatttcgtttcatgtataaaagttcttctaattc 21145562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 42312126 - 42312219
Alignment:
Q  20 gacaaatccaaacgacactgttacataaatttcac--ctctttcacttaa--ttctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||| ||||||||| ||||  ||||||||||  |||||||||||||  || |||||| ||| ||||||||||| || |||||||||||||    
T  42312126 gacaaatctaaacgacaccgttaagtaaatttcacctctctttcacttaattttttttttatttcgtttcatgtttagaagttcttctgattct 42312219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 32956889 - 32956929
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacct 56  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  32956889 gagtgacaaatccaaacgacactgttaggtaaatttcacct 32956929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 773695 - 773637
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    |||||||||||| | || ||||||||| ||||||| |||||||||| ||||| ||||||    
T  773695 ttttattttattggcggcctattttaaaaagagagtcgaacctcctgtttcataggaac 773637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 29730904 - 29730846
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    |||||||||| | |||| ||||||||| ||||||| ||| |||||||||||| ||||||    
T  29730904 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttcataggaac 29730846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 29742043 - 29742101
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    |||||||||| | |||| ||||||||| ||||||| ||| |||||||||||| ||||||    
T  29742043 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttcataggaac 29742101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 44876111 - 44876020
Alignment:
Q  13 aaggagtgacaaatccaaacgacactgttacataaatttca--cctctttcacttaa--ttctttttaattcctttcatgtttaaaacttctt 101  Q
    |||||||||||||||||||||||||| |||  |||||||||   |||||||||||||  || |||||| ||| ||||||||||| || |||||    
T  44876111 aaggagtgacaaatccaaacgacact-ttaggtaaatttcatctctctttcacttaattttttttttatttcatttcatgtttagaagttctt 44876020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 26633486 - 26633574
Alignment:
Q  26 tccaaacgacactgttacataaatttcac--ctctttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||| ||||  ||||||||||  ||||||||||||||| | ||||| ||  ||||||||||| |  |||||||||||||||    
T  26633486 tccaaacgacaccgttaagtaaatttcacctctctttcacttaattttattttattttgtttcatgtttagacgttcttctgattctga 26633574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 36438292 - 36438204
Alignment:
Q  26 tccaaacgacactgttacataaatttcacct--ctttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||| ||||| ||||  ||||||||||||  ||||||||||||| | ||||  ||  |||||||||||||| |||||||||||||||    
T  36438292 tccaaatgacaccgttaggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctga 36438204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 4856106 - 4856293
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||      
T  4856106 aggagtgacaaatccaaacgacattgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctga-t 4856204  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||| |||||        ||||||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  4856205 tttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 4856293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 26151698 - 26151511
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||      
T  26151698 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattactttcatgtttagaacttcttctgattctga-t 26151600  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||| |||||        ||||||||||||||| |||||| ||||||||| ||||||||| | ||||||||||||    
T  26151599 tttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctattttaaaaagagagccaagcctcctatttca 26151511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 45619089 - 45619186
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  45619089 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctga 45619186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 7993746 - 7993932
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||| |||||||||||||||||||||| || |||||||||||||||      
T  7993746 aggagtgacaaatccaaacgacaccgttagataaatttcacatctttcactt-attttttttaattcctttcatgtttagaagttcttctgattctga-t 7993843  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           |||||||||||||||||        ||| ||||||||||| |||| | ||||||||| ||||||||||||||||||||||||    
T  7993844 tttttttaatgaaatttaactacacaaaaaaattatgttttattttactaggtgcctattttaaaaagagagccgaacctcctatttca 7993932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 18676261 - 18676073
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||      
T  18676261 aggagtgacaaattcaaacgacaccgttagataaagttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgatt 18676162  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||| |||||        ||||||||||||||| |||||| ||||||||  |||||||| || |||| |||||||    
T  18676161 tttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggggcctattttataaagagagctgagcctcttatttca 18676073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 41096488 - 41096303
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcactta-attctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||  || |||||||||||||||||||||| || ||||||| ||| ||      
T  41096488 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttattttttttttaattcctttcatgtttagaagttcttcttattatg-- 41096391  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
            |||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  41096390 ttttttttaatgaaatttaactaca--caaaaattacgttttattttactaggggtctattttaaaaagagagccgagcctcctatttca 41096303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 42411509 - 42411412
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  42411509 aggagtgaaaaatccaaacgacaccgttagataaatttaacctctttcacttaattatttttaatttctttcatgtttaaaagttcttctgattctga 42411412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 13020536 - 13020719
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||| |||| |||| ||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||      
T  13020536 aggagtgaaaaattcaaatgacaccgttagataaatttcacctctttcacttaa-tcttttttattcctttcatgtttagaacttcttctaattctga-t 13020633  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatt 199  Q
           ||||||||||| | |||        ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  13020634 tttttttaatgaaatttagcaacacaaaaaaattacgttttattttactaggggcctattttaaaaagagagccgaacctcctatt 13020719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 36481507 - 36481691
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||     
T  36481507 aggagtgacaaatccaaacgacaccggtagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctga- 36481605  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctat 198  Q
            ||||||||||||| |||        ||||||||||||||| |||  | ||||||||| ||||||||| ||||||||||    
T  36481606 ttttttttaatgaaatttaaccacacaaaaaaattacgttttattttactagaagactattttaaaaagagagccaaacctcctat 36481691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 6530772 - 6530962
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga-- 111  Q
    |||||||||| || |||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||| |||||||||      
T  6530772 aggagtgacagattcaaacgtcactgttagataaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttttgattctgatt 6530871  T
Q  112 nnnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
             ||||||||||| |||||        ||||||||||||||| |||| | ||||||||| ||||||||||| ||||||||||||    
T  6530872 tttttttttaatgaaatttagctacacaaagaaattacgttttattttaataggagcctattttaaaaagagagccgagcctcctatttca 6530962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 42759703 - 42759610
Alignment:
Q  18 gtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||| |||||||||| |||| ||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42759703 gtgacaaattcaaacgacaccgttagataaattccatctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctga 42759610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 12269532 - 12269635
Alignment:
Q  9 agcaaaggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||| |||| |||||||| |||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||    
T  12269532 agcagaggaatgacaaattcaaacgacaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgatt 12269631  T
Q  108 ctga 111  Q
    ||||    
T  12269632 ctga 12269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 25222436 - 25222529
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||||||||| ||||| |||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  25222436 aggagtgacaaattcaaacaacaccgttatataaatttcacatctttcacttaattttttttaattcctttcatgtttagaactttttctgatt 25222529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 45042503 - 45042691
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||| ||||||||| ||||  ||||||||||||| |||||||||||| ||||||||||||||||| |||| || |||||| ||||||||      
T  45042503 aggagtgacaaattcaaacgacattgttggataaatttcacctatttcacttaattttttttaattcctttcatatttagaagttcttccgattctgatt 45042602  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           |||||| |||| |||||        ||||||||||||||| || ||||||||||||| ||| |||||||  ||| |||||||    
T  45042603 tttttttaatgaagtttagctacacaaaaaaattacgttttattttactatgggtctattttaaaaagtgagccgattctcatatttca 45042691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 2063918 - 2064016
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||| || ||||||||||||| ||| |||| ||  ||||||||||||||    
T  2063918 aggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaatttttttttaattccttccatatttagaaggtcttctgattctga 2064016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 34061791 - 34061723
Alignment:
Q  42 acataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    |||||| ||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||    
T  34061791 acataagtttcacctctttcacttaattttttttaattccttttatatttaaaaattcttctgattctg 34061723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 19367369 - 19367298
Alignment:
Q  15 ggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttca 86  Q
    |||||||||||| |||||||||| |||| |||||||||||||||||||||||| | ||||||||| ||||||    
T  19367369 ggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaactttttttaatttctttca 19367298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 31273115 - 31273023
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||||||||||||||||| ||||  ||||||||||  ||||||| ||||||| || ||||||| ||| || |||| || |||||||||||    
T  31273115 agtgacaaatccaaacgacacagttaggtaaatttcacttctctttcgcttaatttttcttaattcgtttaatttttagaagttcttctgatt 31273023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 27302486 - 27302392
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacc--tctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||||||||||  ||||  |||||||||||  | |||||||||||| |||| | ||| |||||||||||  | |||||||||||||    
T  27302486 gagtgacaaatccaaacgacaacgttaggtaaatttcacctttatttcacttaatt-ttttaatttcgtttcatgtttattagttcttctgattct 27302392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 34061685 - 34061629
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| ||||||  |||||||| |||||||| || ||||||||||||    
T  34061685 ttacgttttattttactaggggcttattttaaaaagagagctgagcctcctatttca 34061629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 17117460 - 17117409
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||| |||| |||||||||  |||||||||| ||||||||||||    
T  17117460 ttttattttattgggggcctattttaaatagagagccgagcctcctatttca 17117409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 13001746 - 13001776
Alignment:
Q  11 caaaggagtgacaaatccaaacgacactgtt 41  Q
    |||||||||||||||||||||||||||||||    
T  13001746 caaaggagtgacaaatccaaacgacactgtt 13001776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 17117594 - 17117498
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttt-taattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||||| ||||  ||||||  ||  ||||||||||||||| |||| || ||| ||||||||||| ||  ||||||||||||||    
T  17117594 agtgacaaatccaaacgacaccgtta-gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctga 17117498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 1226211 - 1226120
Alignment:
Q  23 aaatccaaacgacactgttacataaatttcacctct--ttcacttaattctttttaattcc-tttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||  ||||  ||||||||| ||||  ||||||||||| ||||| ||| | ||||||||||| || ||||||| |||||||    
T  1226211 aaatccaaacgacatcgttaggtaaatttcatctctctttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattctga 1226120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 19367244 - 19367188
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| |||| | ||||||||| ||||||| | | ||||||||||||    
T  19367244 ttacgttttattttactaggagcctattttaaaaagagagtcaagcctcctatttca 19367188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 25222569 - 25222625
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| |||||| ||| ||||| || |||||| ||||| ||||||||    
T  25222569 ttacgttttattttactaggggcctactttaaaaaaagagccaaaccttctatttca 25222625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 45619220 - 45619276
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| || ||| ||||||||| ||||||| ||| |||| |||||||    
T  45619220 ttacgttttattttactaagggcctattttaaaaagagagtcgagcctcgtatttca 45619276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 2618468 - 2618653
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||      
T  2618468 aggagtgacaaatccaaacgacaccgttggataaatttcacctctttcacttaatt-tttttaattgctttcatgtttaaaagttcttcttattctga-- 2618564  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           |||||||||||||||||        ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  2618565 tttttttaatgaaatttaactacacaaaaaaattacgttttattttactaggggcctattttaaaaagagagccgaacctcctatttca 2618653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 3514801 - 3514612
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga-n 112  Q
    |||||||| |||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||      
T  3514801 aggagtgaaaaatccaaacgacaccattagataaatttcacctctttcacttaattttttttaattcctttcatgtttaaaagttcttctgattctgatt 3514702  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
            |||||||||||||||||        ||||||||||||||| || ||||||||||||| |||||||  || ||||||||||||    
T  3514701 ttttttataatgaaatttaactacaaaaaaaaattacgttttattttactaagggtctattttaaaaagagagttgagcctcctatttca 3514612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 31258523 - 31258427
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||    
T  31258523 aggagtgacaaatccaaacaacaccgttagataaatttcacctctttcacttaatttttgttaattcctttcatgtttagaacttcttctaattctg 31258427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 7525117 - 7525021
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||| |||||||    
T  7525117 aggagtgacaaatccaaa-gacaccgttagataaatttcacctatttcacttaattttttttaattcctttcatgtttagaactttttcttattctga 7525021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 57801 - 57892
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgat 106  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||| ||||    
T  57801 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaatt-tttttaattcctttcatatttagaagttcttttgat 57892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 22503859 - 22504044
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaa-ttcctttcatgtttaaaacttcttctgattctgannnn 115  Q
    |||||||||| |||| ||||| |||| |||||||||||||||| ||||||||| ||||||| ||||||| ||||||| |||||||||||||||||         
T  22503859 agtgacaaattcaaatgacaccgttagataaatttcacctctt-cacttaattttttttaaattccttttatgtttagaacttcttctgattctgttttt 22503957  T
Q  116 nnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
         ||||||||||| |||||        ||||||||||||||| |  ||||||||||||| |||||| |||| ||||||||||||    
T  22503958 tttttaatgaaatttagctacacaaaaaaattacgttttattttactgagggtctattttaaaaagagaaccgagcctcctatttca 22504044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 6360872 - 6360965
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||||||||| |||||||||| |||| |||||||||| |||||||||||| || |||||||||||||||||||||| || ||||| |||||    
T  6360872 aggagtgacaaattcaaacgacaccgttagataaatttcatctctttcacttatttttttttaattcctttcatgtttagaagttcttttgatt 6360965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 12614667 - 12614574
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||| |||||| ||||||||   |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||    
T  12614667 aggagtaacaaattcaaacgacc--gttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattct 12614574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 6754319 - 6754395
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgttt 91  Q
    |||||||||||||||||| ||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  6754319 aggagtgacaaatccaaatgacaccgttgaataaatttcacctctttcacttaatt-tttttaattcctttcatgttt 6754395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 29149516 - 29149587
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttc 85  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  29149516 aggagtgacaaatccaaacgataccgttacgtaaatttcacctctttcacctaattttttttaattcctttc 29149587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 29401253 - 29401439
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||| |||||   || |||||||||||||||||||||||||| |||| ||||||||| || |||| ||||||||||  || |||      
T  29401253 aggagtgacaaatccaaatgacacc--tagataaatttcacctctttcacttaatttttttaaattccttttatatttagaacttcttctcgttatgatt 29401350  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||| ||| |        ||| ||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  29401351 tttttttaatgaaatttagctatacaaaaaaattatgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 29401439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 11088694 - 11088782
Alignment:
Q  27 ccaaacgacactgttacataaatttcacctct--ttcacttaattc--tttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||| |||||||||  ||||||||||||||  ||||||||||||  |||||| ||| ||||||||||| || ||||||| |||||||    
T  11088694 ccaaacaacactgttaggtaaatttcacctctctttcacttaattctttttttatttcgtttcatgtttagaagttcttctaattctga 11088782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 29308282 - 29308231
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||| |||| |||||||||  |||||||||| ||||||||||||    
T  29308282 ttttattttattgggggcctattttaaatagagagccgagcctcctatttca 29308231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 31258392 - 31258335
Alignment:
Q  146 ttacgttttattttattaggggtctatttt-aataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| |||||| || |||| || ||||||||||| ||||||||||||    
T  31258392 ttacgttttattttactaggggcctgtttttaaaaagagagccgagcctcctatttca 31258335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 6361007 - 6361063
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||| ||||||||||| |||||  ||||||||| ||||||||||| ||| ||||||||    
T  6361007 ttatgttttattttactagggacctattttaaaaagagagccgagccttctatttca 6361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 28885620 - 28885434
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnn 115  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||        
T  28885620 gagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctaattctgatttt 28885521  T
Q  116 nnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
         |||||||||||||||||        ||||||||||||||| ||||  |||||||||| ||||||| ||| ||||||||||||    
T  28885520 tttttaatgaaatttaactacacaaaaaaattacgttttattttactaggtatctattttaaaaagagagtcgagcctcctatttca 28885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 30899771 - 30899965
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa--ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||||||||||||| || |||||||||||||||    
T  30899771 aggaatgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttttaattcctttcatgtttagaagttcttctgattctga 30899870  T
Q  112 nnnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttatttt----attaggggtctattttaataagagagccgaacctcctatttca 202  Q
             ||||||||||||||| |        ||||||||||||||    |||| ||||||||||||| ||||||||||||||||||||||||    
T  30899871 tttttttttaatgaaatttaactagacaaaaaaattacgttttattttactaattaagggtctattttaaaaagagagccgaacctcctatttca 30899965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 51110055 - 51109862
Alignment:
Q  11 caaaggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    |||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||||    
T  51110055 caaaggagtgacaaattcaaatgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaaattcttctaattctg 51109956  T
Q  111 a-nnnnnnnnnaatgaaatttaactac-atnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |          ||||||||||| |||| |        ||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||    
T  51109955 attttttttttaatgaaatttagctacaaaaaaaaaattacgttttattttactaggggcctattttaaaaagagagccgagcctcctatttca 51109862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 14084651 - 14084463
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||| |||| || |||||||||||||||||||||| || |||||||||||||||     
T  14084651 aggagtgacaaatccaaacgacaccattagataaatttcacctctttcatttaatttttttttaattcctttcatgtttagaagttcttctgattctgat 14084552  T
Q  113 nnnnnnnnaatgaaatttaactac-atnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
            ||||||||||| |||| |        ||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||    
T  14084551 ttttttttaatgaaatttagctacaacaaaaaaattacgttttattttattataggtctattttaaaaagagagccgagcctcctattt 14084463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 6150835 - 6150930
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||    
T  6150835 aggagtgacaaatccaaacgacaccgttagataaatttcacctatttcacttaattttttttaattcctttcatgtttagaagttcttctgattct 6150930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 17487234 - 17487042
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa----ttctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||||||||||||||||| || | |||| ||||||||||||||||||||||||    || |||||||||||||||||||||| ||||||||||||||||    
T  17487234 aggagtgacaaatccaaacaacgccgttagataaatttcacctctttcacttaattttttttttttaattcctttcatgtttagaacttcttctgattct 17487135  T
Q  110 gannnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||         ||||||||||| |||||        ||||||||||||||| || ||| ||||||||| ||||||| ||| ||||||||||||    
T  17487134 gagtttttttcaatgaaatttagctacacaaaaaaattacgttttattttactaagggcctattttaaaaagagagtcgagcctcctatttca 17487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 52240487 - 52240390
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||    
T  52240487 aggagcgacaaattcaaacgacactgttagataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttcttctgattctga 52240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 20470725 - 20470821
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||    
T  20470725 aggagtgacaaatccaaacaacaccgttagataaatttcacctctttcacttaatttttgttaattcctttcatgtttagaacttcttctaattctg 20470821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 48722321 - 48722129
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa----ttctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    || ||||||||| |||||||||||| || |||||||||||||    
T  48722321 aggagtgacaaatccaaacgacaccgttagataaatttcacctcttttacttaatattttttttttaatttctttcatgtttagaagttcttctgattct 48722222  T
Q  110 gannnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||         |||||||||||||||||        ||||||||||||||| || ||  ||||||||| ||||||| ||| ||||||||||||    
T  48722221 gatttttttttaatgaaatttaactacacaacaaaattacgttttattttactatggacctattttaaaaagagagtcgagcctcctatttca 48722129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 50552608 - 50552705
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||| |||||||||    
T  50552608 aggagtgacaaatccaaacgacaccattagataaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttttgattctga 50552705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 30004859 - 30004673
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    ||||||||||||| ||||||| || |||| ||||||||||||| |||||||||| || |||||||||||||||||||||| || |||||||||||||||     
T  30004859 aggagtgacaaattcaaacgataccgttagataaatttcacctttttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctga- 30004761  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
            |||||| |||| |||||        ||||||||||||||| || ||| ||||||||| ||||||||||| ||||||||||    
T  30004760 tttaattcaatgaagtttagctacacaaaaaaattacgttttattttactatgggcctattttaaaaagagagccgagcctcctattt 30004673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 10109833 - 10109934
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa----ttctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||||||    || |||||||||||||||||||||| || |||||||||||||    
T  10109833 aggagtgacaaatccaaacgacgccgttagataaatttcacctctttcacttaattttttttttttaattcctttcatgtttagaagttcttctgattct 10109932  T
Q  110 ga 111  Q
    ||    
T  10109933 ga 10109934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 18127891 - 18127792
Alignment:
Q  11 caaaggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    ||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||||||||    
T  18127891 caaaggagtgacaaatccaaacgacaccgttaggtaaattttacctctttcacttaattttttttaatttctttaatgtttagaagttcttatgattctg 18127792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 25930718 - 25930813
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||| |||||| |||| ||  ||||||||||||||    
T  25930718 gagtgacaaatccaaacgacaccgttagataaatttcatctctttcacttaattttttttaattcttttcatatttagaagctcttctgattctga 25930813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 120 - 198
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgttt 91  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  120 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgttt 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 33124559 - 33124417
Alignment:
Q  47 aatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnnnnnnaatgaaatttaactacatnnnnnnnt 146  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||         ||||||||||||||| |        |    
T  33124559 aatttcacctctttcacttaattttttttaattcgtttcatgtttaaaagttcttctgattctgaattttttttaatgaaatttaactatacaaaaaaat 33124460  T
Q  147 tacgttttattttattaggggtctattttaataagagagccga 189  Q
    |||||||||||||| |||| | ||||||||| |||||||||||    
T  33124459 tacgttttattttactaggagcctattttaaaaagagagccga 33124417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 20905237 - 20905140
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    |||||||||||||||||||||||| |||  |||||||||||| ||||||||||| || ||||||||||||||||| |||| || ||||||| ||||||    
T  20905237 aggagtgacaaatccaaacgacaccgttggataaatttcaccactttcacttaagttttttttaattcctttcatatttagaagttcttcttattctg 20905140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 52055664 - 52055762
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaatt-ctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||| ||||||||| |||| |||||||| |||||||||||||| ||  |||||||||||||||||| ||| || || ||||||||||||    
T  52055664 aggagtgacaaatctaaacgacaccgttagataaattttacctctttcacttatttattttttaattcctttcatgcttagaagtttttctgattctga 52055762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 29208049 - 29207952
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||| ||||| |||  |||||||||| |||||| |||||||| |||| |||  ||||||| |||| || |||||||||||||||    
T  29208049 aggagtgacaaatccaaatgacaccgttggataaatttcatctcttttacttaatttttttaaatgtctttcatatttagaagttcttctgattctga 29207952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 50371246 - 50371345
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctct--ttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||| |||  ||||  ||||||||||||||  ||||||||||| |||||| ||| ||||||||||| || ||||| |||||||||    
T  50371246 aggagtgacaaatccaaacaacatcgttaggtaaatttcacctctctttcacttaattttttttatttcgtttcatgtttagaagttcttatgattctga 50371345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 6333460 - 6333396
Alignment:
Q  24 aatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatg 88  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||| |||||| ||| |||||||    
T  6333460 aatccaaacgacactgttaggtaaatttcatctctttcacttaattttttttatttcgtttcatg 6333396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 37873697 - 37873611
Alignment:
Q  27 ccaaacgacactgttacataaatttcac--ctctttcacttaattct--ttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||| |  ||||| ||  |||||||||||||| ||||| |||||||    
T  37873697 ccaaacgacactgttacgtaaatttcacctctctttcacttaatttttattttagtttgtttcatgtttaaaagttcttatgattct 37873611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 1269662 - 1269763
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacc--tctttcactta--attctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||||||||||||| ||| | |||||||||||  |||||||||||  | | |||||| ||| ||||||||||| || ||||  |||||||    
T  1269662 aggagtgacaaatccaaacgacaccgttccgtaaatttcacctttctttcacttattaatttttttatttcgtttcatgtttagaagttctattgattct 1269761  T
Q  110 ga 111  Q
    ||    
T  1269762 ga 1269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 26486295 - 26486228
Alignment:
Q  45 taaatttcacctctttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||| |||||| | ||||| ||  |||||||||||||| |||||||||||||||    
T  26486295 taaatttcacctctttcaattaattttattttattttgtttcatgtttaaaagttcttctgattctga 26486228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 15441403 - 15441495
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||||||||||||||||||| | ||||  ||||||||||  ||||||||||| ||| |||||| | | ||||||||||| || |||||||||||    
T  15441403 gagtgacaaatccaaacgacgccgttaggtaaatttcacctctctttcactt-attttttttattccgtttcatgtttagaagttcttctgatt 15441495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 12971655 - 12971704
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
    |||||||||||||||||| ||||||||  |||||||||| ||||||||||    
T  12971655 ttttattttattaggggtttattttaaatagagagccgagcctcctattt 12971704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 254 - 317
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    ||||||||||||||| | || | ||||||||| |||||| |||| |||||||||||| ||||||    
T  254 ttacgttttattttactgggagcctattttaaaaagagaaccgagcctcctatttcacaggaac 317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 24556929 - 24556972
Alignment:
Q  26 tccaaacgacactgttacataaatttcacctctttcacttaatt 69  Q
    |||||||||||| ||||  |||||||||||||||||||||||||    
T  24556929 tccaaacgacaccgttaggtaaatttcacctctttcacttaatt 24556972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 50371690 - 50371737
Alignment:
Q  153 ttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
    ||||||||||| |||||||||||| || ||||| ||||||||||||||    
T  50371690 ttattttattaagggtctattttattatgagagtcgaacctcctattt 50371737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 20470857 - 20470914
Alignment:
Q  146 ttacgttttattttattaggggtctatttt-aataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| |||||| || |||| || ||||||||||| ||||||||||||    
T  20470857 ttacgttttattttactaggggcctgtttttaaaaagagagccgagcctcctatttca 20470914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 27703472 - 27703387
Alignment:
Q  24 aatccaaacgacactgttacataaatttcacctct--ttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||  ||||||||||||||  |||||||||    ||||| ||| ||||||||||| || || || |||||||||    
T  27703472 aatccaaacgacactgttaggtaaatttcacctctccttcacttaa----ttttatttcgtttcatgtttagaagttattatgattctga 27703387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 20905105 - 20905049
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||| ||| |||||  ||||||||| ||||||| ||| ||||||||||||    
T  20905105 ttacgttttatcttactagggacctattttaaaaagagagtcgagcctcctatttca 20905049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 48660266 - 48660310
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcc 195  Q
    ||||||||||||||||| ||||||| ||| ||||||||| |||||    
T  48660266 ttttattttattaggggcctatttttatatgagagccgagcctcc 48660310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 27632514 - 27632699
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnn 116  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||         
T  27632514 agtgacaaatccaaacaacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 27632613  T
Q  117 nnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
        |||||| ||||||||||        ||||||||||||||| |||||| ||||||||| | ||||||||| ||||||||||||    
T  27632614 ttttaatgaagtttaactacacaaaaaaattacgttttattttactaggggcctattttaaaatgagagccgagcctcctatttca 27632699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 19661489 - 19661681
Alignment:
Q  11 caaaggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  19661489 caaaggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctg 19661588  T
Q  111 -annnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
               |||||||||||||||||        ||| ||||||||||| |||| | ||||||||| |||||||| || ||||||||||||    
T  19661589 tttttttttttaatgaaatttaactacacaaaaaaattatgttttattttactaggagcctattttaaaaagagagcagagcctcctatttca 19661681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 53011825 - 53012022
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa---ttctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||   || |||||||||||||||||||||| || ||||||||||||||    
T  53011825 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaatttttttttttaattcctttcatgtttagaagttcttctgattctg 53011924  T
Q  111 annnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    |         ||||||||||| |||||        ||||||||||||||| || | | ||||||||| ||||||||||| |||||||||||| ||||||    
T  53011925 a-ttttttttaatgaaatttagctacacaaaaaaattacgttttattttactatgagcctattttaaaaagagagccgagcctcctatttcacaggaac 53012022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 28463539 - 28463442
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  28463539 aggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttgatgtttagaacttcttctgattctga 28463442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 11681691 - 11681505
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgannn 114  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||       
T  11681691 gagtgacaaatccaaacaacaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaactttttctgattctga-tt 11681593  T
Q  115 nnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
          ||||||||||| |||||        ||| ||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  11681592 ttttttaatgaaatttagctacacaaaaaagttatgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 11681505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 11689970 - 11689784
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgannn 114  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||       
T  11689970 gagtgacaaatccaaacaacaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaactttttctgattctga-tt 11689872  T
Q  115 nnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
          ||||||||||| |||||        ||| ||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  11689871 ttttttaatgaaatttagctacacaaaaaagttatgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 11689784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 41038363 - 41038455
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  41038363 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaatt-tttttaattcctttcatgtttagaagttcttctgatt 41038455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 23426117 - 23426022
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||||||||||||||||| || | |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||    
T  23426117 aggagtgacaaatccaaacaacgccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattct 23426022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 32130741 - 32130644
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| ||||||||||  ||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  32130741 aggagtgacaaattcaaacgacacaattagataaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctga 32130644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 44478153 - 44478338
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||| || ||      
T  44478153 aggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctcttatgtttagaacttcttctgactcgga-t 44478251  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
           ||||||||||| |||||        ||||||||||||||| ||  | |||||||||| ||||||| ||||||||||||||    
T  44478252 tttttttaatgaaatttagctacacaaaaaaattacgttttattttactaaagatctattttaaaaagagagtcgaacctcctattt 44478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 16887932 - 16887841
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || || ||||||||    
T  16887932 gagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttattctgatt 16887841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 23256706 - 23256904
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgttt-aaaacttcttctgattctga- 111  Q
    ||||||||||||| |||||||||| | || ||||||||||||| ||| |||||||| |||||||||||||||||||||  ||  |||||||||||||||     
T  23256706 aggagtgacaaattcaaacgacaccggtagataaatttcacctattttacttaattttttttaattcctttcatgtttggaagtttcttctgattctgat 23256805  T
Q  112 --nnnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
               |||||||||||||||||        ||||||||||||||| || ||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  23256806 tttttttttttaatgaaatttaactacacaaaaaaattacgttttattttacta-gggcctattttaaaaagagagccgagcctcctatttcacaggaac 23256904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 29221572 - 29221475
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||  ||||||||| |||  || ||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||    
T  29221572 aggagtgacaaatttaaacgacaccgttggattaatttcacctctttcacttaattttttttaattcctttcatatttagaagttcttctgattctga 29221475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 29579996 - 29580063
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattccttt 84  Q
    ||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||||||||||||    
T  29579996 agtgacaaatccaaatgataccgttagataaatttcacctctttcacttaattttttttaattccttt 29580063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 5545441 - 5545538
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa--ttctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||||||||||| |||||||||| ||||  |||||||||| ||||||||||||  || |||||| ||| ||||||||||| || |||||||||||||    
T  5545441 aggagtgacaaattcaaacgacaccgttaggtaaatttcacgtctttcacttaattttttttttatttcgtttcatgtttagaagttcttctgattct 5545538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 16072711 - 16072785
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcat 87  Q
    |||||||||||| ||||| ||||  |||| |||||||||||||||||||||||| || |||||||||||||||||    
T  16072711 aggagtgacaaacccaaatgacatcgttagataaatttcacctctttcacttaatttttttttaattcctttcat 16072785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 51066377 - 51066324
Alignment:
Q  13 aaggagtgacaaatccaaacgacactgttacataaatttcacctctttcactta 66  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  51066377 aaggagtgacaaatccaaatgacactgttaggtaaatttcacctctttcactta 51066324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 41038496 - 41038552
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||| |||||||||| |||||| ||||||||| ||||||||||| ||||||||||||    
T  41038496 ttacattttattttactaggggcctattttaaaaagagagccgagcctcctatttca 41038552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 29221442 - 29221387
Alignment:
Q  147 tacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||||| ||| || ||||||||| ||||||||||| ||||||||||||    
T  29221442 tacgttttattttactagaggcctattttaaaaagagagccgagcctcctatttca 29221387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26328984 - 26328883
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctct--ttcacttaattcttttt--aattcctttcatgtttaaaacttcttctgattct 109  Q
    |||| ||| |||| ||||||||||| |||  ||||||||||||||  || ||||||||||||||  | ||| ||||||||||| || ||||||| |||||    
T  26328984 aggaatgataaattcaaacgacacttttaggtaaatttcacctctcttttacttaattctttttttatttcttttcatgtttagaaattcttctaattct 26328885  T
Q  110 ga 111  Q
    ||    
T  26328884 ga 26328883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 26328829 - 26328789
Alignment:
Q  169 ctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    ||||||||| ||||||| |||||||||||||||| ||||||    
T  26328829 ctattttaaaaagagagtcgaacctcctatttcataggaac 26328789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 35653919 - 35653836
Alignment:
Q  28 caaacgacactgttacataaatttcacctct--ttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattc 108  Q
    |||| ||||| |||| |||||||||||||||  ||||||||||| | ||||  ||  |||||||||||||| ||||||||||||    
T  35653919 caaatgacaccgttagataaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattc 35653836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 17086 - 16897
Alignment:
Q  11 caaaggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    ||||| |||||||||| |||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  17086 caaagaagtgacaaattcaaacgacaccgttggataaatttcacctctttcacttaatt-tttttaattcctttcatgtttagaacttcttcagattctg 16988  T
Q  111 annnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |         ||||||||||| |||||        |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  16987 a-ttttatttaatgaaatttagctacacaaaaaaattacgttttattttattaggggcctattttaaaaagagagccgagcctcctatttca 16897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 43926274 - 43926177
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  43926274 aggagtgacaaatccaaacgacaccgttacataaatttcacctctttctcttaattttttttaattcctttcatgtttagaacttcttctgattctga 43926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 1004184 - 1004358
Alignment:
Q  28 caaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga-nnnnnnnnnaatgaa 126  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          ||||||    
T  1004184 caaacgacaccgttagataaatttcacctctttcacttaatt-tttttaattcctttcatgtttaaaacttcttctgattctgattttttttttaatgaa 1004282  T
Q  127 atttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||       ||||||||||||||| || || |||||||||| || |||| ||| ||||||||||||    
T  1004283 atttaactacataaaaaaattacgttttattttactatggatctattttaaaaaaagagtcgagcctcctatttca 1004358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 18420560 - 18420369
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctga- 111  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |||||||||| || |||||||||||||||||||||| || || ||||||||||||     
T  18420560 aggagtgacaaatccaaacgacaccgttagataaatttcacctttttcacttaatttttttttaattcctttcatgtttagaagttattctgattctgat 18420461  T
Q  112 -nnnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
              ||||||||||| |||||        ||||||||||||||| |||| | ||||||||| ||||||||||| ||||||||||||    
T  18420460 ttttttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggagactattttaaaaagagagccgagcctcctatttca 18420369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 3445657 - 3445833
Alignment:
Q  23 aaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnnnnnnaa 122  Q
    ||||||||||||||| |||| ||||||||| |||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||||         ||    
T  3445657 aaatccaaacgacaccgttagataaatttcgcctcttccacttaattttttttaattcttttcatgtttagaagttcttctgattctga-ttttttttaa 3445755  T
Q  123 tgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||||||        ||||||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  3445756 tgaaatttaactaca--caaaaattacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 3445833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 7858198 - 7858382
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||| ||||||||| ||||| |||| |||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||      
T  7858198 aggagtgaaaaatccaaatgacaccgttagataaatttcacctctttcacttta-tcttttttattcctttcatgtttagaacttcttctgattctgatt 7858296  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatt 199  Q
           ||||||||||| |  ||        ||||||||||||||| |||||| ||||||||| ||||||| ||| |||||||||    
T  7858297 tttttttaatgaaatttagcagcacaaaaaaattacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatt 7858382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 13585412 - 13585509
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||| |||||||||| | |||| ||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  13585412 aggagtgacaagtccaaacgacgccgttagataaatttcacctttttcacttaattttttttaattcctttcatgtttagaagttcttctgattctga 13585509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 43968021 - 43967924
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||||   ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||    
T  43968021 aggagtgacaaatccaaacgacatccttagataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttcttctgattctga 43967924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 42951721 - 42951558
Alignment:
Q  39 gttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnnnnnnaatgaaatttaactacat 138  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||  || ||||| |||||||||         ||||||||||| |||||     
T  42951721 gttagataaatttcacctctttcacttaattttttttaattcctttcatgtttggaagttcttatgattctgattttttttaaatgaaatttagctacac 42951622  T
Q  139 nnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||||||| |||    ||||||||| ||||||||||| ||||||||||||    
T  42951621 aaaaaaattacgttttattttactagtaacctattttaaaaagagagccgagcctcctatttca 42951558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 3471713 - 3471809
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||| | ||||||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||| ||||||| || ||||| |||||||||    
T  3471713 aggagtgatagatccaaacgacaccgttagataaatttcacctatttcacttaatt-tttttaattcctttaatgtttagaagttcttatgattctga 3471809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 18112230 - 18112424
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcactta--------attctttttaattcctttcatgtttaaaacttcttctga 105  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||||         || ||||||||| |||||||||||| || ||||| ||     
T  18112230 aggagtgacaaatccaaacgacaccgttagataaatttaacctctttcacttattattttttttttttttaatttctttcatgtttagaagttcttatgg 18112329  T
Q  106 ttctgannnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||         ||||||||||| |||||        ||||||||||||||| || ||  ||||||||| ||||||||||||||||||||||||    
T  18112330 ttctga-ttttttttaatgaaatttagctacacaaaaaaattacgttttattttacta-ggacctattttaaaaagagagccgaacctcctatttca 18112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 32098130 - 32098034
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||||| |||||||||||||| ||||| ||||||||||  ||||||||||||| || |||||| ||| ||||||||||| || ||| |||||||    
T  32098130 aggagtgacgaatccaaacgacaccgttacgtaaatttcacttctctttcacttaatttttttttatttcgtttcatgtttagaagttcatctgatt 32098034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 34523900 - 34523806
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttt-taattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||||| ||||  ||||||  ||||||||||||||||| |||| || ||| ||||||||||| ||  ||||||||||||||    
T  34523900 agtgacaaatccaaacgacaccgtta-ttaaattctacctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctga 34523806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 44664997 - 44664936
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattcttttt 75  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||| |||||||||||| |||||    
T  44664997 aggagtgacaaatccaaacgataccattagataaatttcacctttttcacttaatttttttt 44664936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 3628688 - 3628600
Alignment:
Q  26 tccaaacgacactgttacataaatttcacctct--ttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||| ||||  ||||||||||||||  ||||||||||| | ||||  || ||||||||||||||| ||||| |||||||||    
T  3628688 tccaaacgacacagttaggtaaatttcacctctctttcacttaattttattttgttttctttcatgtttaaaagttcttttgattctga 3628600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 13585550 - 13585606
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||| |||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  13585550 ttacattttattttactaggggcctattttaaaaagagagtcgagcctcctatttca 13585606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 44664423 - 44664367
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| |||||  ||||||||| ||||||||||| || |||||||||    
T  44664423 ttacgttttattttactagggacctattttaaaaagagagccgagccacctatttca 44664367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 34523769 - 34523718
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||| |||| |||||||||  |||||||||| ||||||||||||    
T  34523769 ttttattttattgggggcctattttaaatagagagccgagcctcctatttca 34523718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 30915099 - 30915052
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
    |||||||||||  || ||||||||||| ||||||||||||||||||||||    
T  30915099 ttttattttat--ggagtctattttaaaaagagagccgaacctcctattt 30915052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 36515096 - 36515008
Alignment:
Q  26 tccaaacgacactgttacataaatttcacctct--ttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||| |||| |||||||||| ||||  ||||||||||| | ||||  ||  |||| ||||||||| |||||||||||||||    
T  36515096 tccaaacgacaccgttagataaatttcagctctctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgattctga 36515008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 8341221 - 8341177
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcc 195  Q
    ||||||||||||||||| ||||||| ||| ||||||||| |||||    
T  8341221 ttttattttattaggggcctatttttatatgagagccgagcctcc 8341177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 43926145 - 43926089
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| ||  || ||||||||| ||||||||||| | ||||||||||    
T  43926145 ttacgttttattttactaaaggcctattttaaaaagagagccgagcttcctatttca 43926089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 44664500 - 44664460
Alignment:
Q  71 tttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||| ||||| |||||| |||||||    
T  44664500 tttttaattcctttcatgttcaaaacatcttcttattctga 44664460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 26312101 - 26312198
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  26312101 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctga 26312198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 37046894 - 37047083
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga-n 112  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||||| |||||||      
T  37046894 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcatttaattttttttaatttctttcatgtttagaacttcttctaattctgatt 37046993  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
            ||| ||||||| |||||        ||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||    
T  37046994 ttttttttaataaaatttagctacacaaaaaaattacgttttattttactaagggcctattttaaaaagagagccgaacctcctatttca 37047083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 12661422 - 12661518
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  12661422 aggagtgacaaatccaaacgacactgttagataaatttcacatctttcacttaatt-tttttaattcctttcatgtttagaagttcttctgattctga 12661518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 13474743 - 13474931
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||| ||||||||||||| |||| |||||||||| |||||||      
T  13474743 aggagtgacaaatccaaacgacaccgttagataaattttacctctttcacttaattttttgtaattcctttcatttttagaacttcttcttattctgatt 13474842  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||| ||||||| |||||        ||||||||||||||| ||| || ||||||||| ||||||| ||| ||||||||||||    
T  13474843 tttttttaataaaatttagctacacaaaaaaattacgttttattttactagaggcctattttaaaaagagagtcgagcctcctatttca 13474931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26377724 - 26377628
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  26377724 aggagtgacaaatccaaacgacaccgttagataaatttcatctctttcacttaa-tatttttaattcctttcatgtttagaacttcttctgattctga 26377628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 13423977 - 13424075
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||| ||||||||| |||  |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||    
T  13423977 aggagtgacaaatctaaacgacaccgttcgataaatttcacctctttcacttaatttttttttaattcctttcatgtttaaaagttcttctgattctga 13424075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 19099262 - 19099168
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||||||| ||||||||||| || |||||||||||||||    
T  19099262 agtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaatttttcttaattcttttcatgtttagaagttcttctgattctga 19099168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 13656323 - 13656418
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||    
T  13656323 aggagtgtcaaattcaaacgacaccgttagataaatttcacctcttttacttaattttttttaattcctttcatgtttagaacttcttcttattct 13656418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 27351461 - 27351557
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctct--ttcacttaattctttttaattcctttcatgtttaaaacttcttctgattc 108  Q
    |||||||||||||| |||||||||| |||  ||||||||||||||  ||||||||||| |||||| ||||||||||||||| || ||||||||||||    
T  27351461 aggagtgacaaatctaaacgacactattaggtaaatttcacctctctttcacttaattttttttatttcctttcatgtttagaagttcttctgattc 27351557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 40779302 - 40779399
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctct--ttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||| ||||||||   |||  ||||||||||||||  ||||||||||| |||||| ||| |||||||||||||| ||||||| |||||    
T  40779302 aggagtgacaaatcgaaacgacatcattaggtaaatttcacctctctttcacttaattttttttatttcatttcatgtttaaaatttcttcttattct 40779399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 931618 - 931676
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
    |||| ||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||    
T  931618 ttttgttttactagaggtctattttaaaaagagagccgaacctcctatttcataggaac 931676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 8379393 - 8379301
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgat 106  Q
    |||||||||||||||||||||| ||| | ||||||||||  ||||||||||||||  |||||  ||| ||||||||||| ||  |||||||||    
T  8379393 gagtgacaaatccaaacgacaccgttgcgtaaatttcacctctctttcacttaatattttttttttcgtttcatgtttagaagatcttctgat 8379301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 43511870 - 43511921
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||| |||| |||||||||  |||||||||| ||||||||||||    
T  43511870 ttttattttattgggggcctattttaaatagagagccgagcctcctatttca 43511921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 40956427 - 40956469
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctct 58  Q
    |||||||||||||||||||| | |||| |||||||||||||||    
T  40956427 gagtgacaaatccaaacgacgccgttagataaatttcacctct 40956469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 13656478 - 13656511
Alignment:
Q  169 ctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||| ||||||||||||||||||||||||    
T  13656478 ctattttaaaaagagagccgaacctcctatttca 13656511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 7390340 - 7390257
Alignment:
Q  28 caaacgacactgttacataaatttcac--ctctttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattc 108  Q
    |||||||||| |||| |||||||||||  ||||||||||||||| | ||||  ||  ||| |||||||||| ||||||||||||    
T  7390340 caaacgacaccgttagataaatttcacctctctttcacttaattttattttgttttgttttatgtttaaaagttcttctgattc 7390257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 23069336 - 23069427
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcac--ctctttcacttaattctttttaattcctttcatgtttaaaacttcttct 103  Q
    ||||||||||||| |||||||||| ||||  ||||||||||   ||||||| |||||| |||||| | | |||||| |||| || |||||||    
T  23069336 aggagtgacaaattcaaacgacaccgttaggtaaatttcacatttctttcatttaattttttttattacgtttcatatttagaagttcttct 23069427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 26377587 - 26377539
Alignment:
Q  154 tattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||| |||||| ||||||||| ||||||| ||| ||||||||||||    
T  26377587 tattttactaggggcctattttaaaaagagagtcgagcctcctatttca 26377539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 36718524 - 36718484
Alignment:
Q  71 tttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||||||||||||| ||| ||||| ||||||||    
T  36718524 tttttaattcctttcatgtttagaacatcttccgattctga 36718484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 16823 - 17011
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |      
T  16823 aggagtaacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctaatt 16922  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||| |||||        ||||||| ||||||| |||||| ||||||||| |||||||  || ||||||||||||    
T  16923 tttttttaatgaaatttagctacacaaaaaaattacgttatattttactaggggcctattttaaaaagagagttgagcctcctatttca 17011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 27110823 - 27110636
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||      
T  27110823 aggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttatgattctgatt 27110724  T
Q  114 nnnnnnnaatgaaatttaactaca-tnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctattt 200  Q
           ||||||||||| |||||         ||||||||||||||| || ||||||||||||| ||||||| ||| ||||||||||    
T  27110723 tatttttaatgaaatttagctacacaaaaaaaattacgttttattttactacgggtctattttaaaaagagagtcgagcctcctattt 27110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 6715552 - 6715739
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||| ||||||      
T  6715552 aggagtgacaaatccaaacgacaccattatataaatttcacctctttcacttaattttttttaattccttccatgtttagatcttcttctgcttctga-t 6715650  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
           ||||||||||| |||||        ||||||||||||||| || || |||||||||| ||||||||||| ||||||||||||    
T  6715651 tttttttaatgaaatttagctacacaaaaaaattacgttttattttactaaggatctattttaaaaagagagccgagcctcctatttca 6715739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 27729717 - 27729627
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  27729717 agtgacaaatccaaacgacactgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgatt 27729627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 46791648 - 46791552
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctg 110  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |||||||    
T  46791648 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttcagattctg 46791552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 8364286 - 8364381
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  8364286 aggagagacaaatccaaacgacaccgttagataaatttcacctctttcacttaatgttttttaattcctttcatgtttagaacttcttctgattct 8364381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 51939503 - 51939302
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgannnnn 116  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||         
T  51939503 agtgacaaatccaaacgacacagttggttaaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctcattctgattttt 51939404  T
Q  117 nnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaaccgccatg 216  Q
        ||||||||||| |||||        ||||||| ||||||| |||| | ||||||||| ||||||| ||| ||| |||||||| ||| || ||||||    
T  51939403 ttttaatgaaatttagctacacaaaaaaattacgttatattttaataggagcctattttaaaaagagagtcgagcctactatttcacagggacggccatg 51939304  T
Q  217 gt 218  Q
    ||    
T  51939303 gt 51939302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 18408307 - 18408399
Alignment:
Q  17 agtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||    
T  18408307 agtgacaaatccaaacgacaccgtttgataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattct 18408399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 21784734 - 21784540
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaa----aacttcttctgattct 109  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||    || ||||| |||||||    
T  21784734 aggagtgacaaatccaaacgacgccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttaattagaagttcttttgattct 21784635  T
Q  110 gannnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagagg 206  Q
    ||         |||||||||||||||||        ||||||||||||||| ||  |  ||||||||| ||||||| ||||||||||||||||||||    
T  21784634 ga-ttttttttaatgaaatttaactacacaaaaaaattacgttttattttacta-tgacctattttaaaaagagagtcgaacctcctatttcagagg 21784540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 24252735 - 24252829
Alignment:
Q  16 gagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattct 109  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  24252735 gagtgacaaatccaaacgaccccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaacttcttctgattct 24252829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 23164523 - 23164330
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctgann 113  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| |||||| |||| || ||||||||||||| |      
T  23164523 aggagtgacaaatccaaacgacaccgttggataaatttcacctctttcacttaattttttttaattcttttcatatttagaagttcttctgattctaatt 23164424  T
Q  114 nnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagagga 207  Q
           ||||||||||| |||||        ||| ||||||||||| ||| || ||||||||| |||||||| |  |||||||||||| ||||    
T  23164423 tttttttaatgaaatttagctacacaaaaaaattatgttttattttactagaggcctattttaaaaagagagctgtgcctcctatttcacagga 23164330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 52655074 - 52654879
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcactta-attctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    ||||||||||||| ||||||| || |||| |||||||||||||||||||||||  || |||||||||||||||||||||| || ||||||||||||| |     
T  52655074 aggagtgacaaattcaaacgataccgttagataaatttcacctctttcacttattttttttttaattcctttcatgtttagaagttcttctgattct-aa 52654976  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttcagaggaac 209  Q
            |||||||||||||||||        ||||||||||||||| |||||  ||||||||| |||||||  || |||||||||||| ||||||    
T  52654975 ttttttttaatgaaatttaactacacaaaaaaattacgttttattttactagggacctattttaaaaagagagttgagcctcctatttcacaggaac 52654879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 23067675 - 23067583
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    |||||||| ||||||||| ||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  23067675 aggagtgaaaaatccaaatgacaccgttagataaatttcacctctttcacttaa-tcttttttattcctttcatgtttagaacttcttctgatt 23067583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 28132687 - 28132594
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||||||| | |||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  28132687 aggagtgacaagttcaaacgacgccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgatt 28132594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 13401573 - 13401666
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||| ||||| |||||||||| || | ||||||||||||||||||| |||||| |||||||||||||||||||||| || |||||||||||    
T  13401573 aggagtgccaaattcaaacgacaccgtaagataaatttcacctctttcaattaattttttttaattcctttcatgtttagaagttcttctgatt 13401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 29387705 - 29387607
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa--ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||  || ||||||||| |||||||||||| || |||||||||||||||    
T  29387705 aggagtgacaaatccaaacaacaccgttagataaatttcacctctttcacttaattttttttttaatt-ctttcatgtttataagttcttctgattctga 29387607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 41707003 - 41706916
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttctt 101  Q
    |||||||||||||||||||||||  |||| |||||||||||| ||||||||||||| |||||||||| ||||||||||| || |||||    
T  41707003 aggagtgacaaatccaaacgacaacgttagataaatttcacccctttcacttaattttttttaattcttttcatgtttagaagttctt 41706916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 25599038 - 25598936
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-----ttctttttaattcctttcatgtttaaaacttcttctgattc 108  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||     || ||||||||| |||||||||||| || ||||||||||||    
T  25599038 aggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaatttttttttttttaatttctttcatgtttagaagttcttctgattc 25598939  T
Q  109 tga 111  Q
    |||    
T  25598938 tga 25598936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 54430662 - 54430760
Alignment:
Q  11 caaaggagtgacaaatccaaacg-acactgttacataaatttcacctctttcacttaattctttt-taattcctttcatgtttaaaacttcttctgatt 107  Q
    |||| |||||||||||||||||| | || |||| ||||||||||||| |||||||||||| |||| |||||||||||||||||| || |||||||||||    
T  54430662 caaacgagtgacaaatccaaacggataccgttagataaatttcacctttttcacttaatttttttttaattcctttcatgtttagaagttcttctgatt 54430760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 20762162 - 20762260
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| ||||||| || |||  |||||||||||||||||||||||| || |||||||||| |||||| |||| || |||||| ||||||||    
T  20762162 aggagtgacaaatacaaacgataccgttgaataaatttcacctctttcacttaatttttttttaattcatttcatatttagaagttcttccgattctga 20762260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 28132549 - 28132498
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||| |||||| ||||||||| ||||||||||| ||||||||||||    
T  28132549 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttca 28132498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 7767189 - 7767277
Alignment:
Q  26 tccaaacgacactgttacataaatttcac--ctctttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||| ||||| ||||  ||||||||||  ||||||||||||||| | ||||| ||  |||||||||||||| |||||||||||||||    
T  7767189 tccaaatgacacagttaggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctga 7767277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 19965799 - 19965735
Alignment:
Q  45 taaatttcacctct--ttcacttaattctttttaattcctttcatgtttaaaacttcttctgatt 107  Q
    ||||||||||||||  |||||||| || |||||| ||||||||||||||| || |||||||||||    
T  19965799 taaatttcacctctctttcacttatttttttttatttcctttcatgtttagaagttcttctgatt 19965735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 46791514 - 46791460
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||| ||||||||||||    
T  46791514 ttacgttttattttactaggggcctatttta--aagagagccgagcctcctatttca 46791460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 21596446 - 21596545
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacct--ctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||  |||||||| ||||||  |||||||||  |  |||||| ||||||||||||| | | ||||||||||| || ||||| |||||||||    
T  21596446 aggagtgacaaaatcaaacgacgctgttaggtaaatttcatttttctttcatttaattctttttattacatttcatgtttagaagttcttttgattctga 21596545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 27729590 - 27729534
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||| |||||||||| |||||  ||||||||| |||| |||||||||||||||||||    
T  27729590 ttacattttattttactagggacctattttaaaaagacagccgaacctcctatttca 27729534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 43905668 - 43905617
Alignment:
Q  151 ttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||||||||||| ||||||||||||||  |||||| ||| ||||||||||||    
T  43905668 ttttattttattgggggtctattttaaatagagagtcgagcctcctatttca 43905617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 8364417 - 8364470
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatt 199  Q
    ||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||||    
T  8364417 ttacgttttattttactatgggcctattttaaaaagagagtcgagcctcctatt 8364470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 46904865 - 46904953
Alignment:
Q  26 tccaaacgacactgttacataaatttcacctct--ttcacttaattct-ttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    |||||||||||| ||||  ||||||||||||||  ||||||||||| | ||||  ||  |||||||||||||| ||||||| |||||||    
T  46904865 tccaaacgacaccgttaggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttcttattctga 46904953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 1649784 - 1649744
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcac 54  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  1649784 aggagtgacaaatccaaacgaaactgttaagtaaatttcac 1649744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 22756 - 22659
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaattctttttaattcctttcatgtttaaaacttcttctgattctga 111  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  22756 aggagtgacaaattcaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctga 22659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 1174 - 1362
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgtttaaaacttcttctgattctgan 112  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||||     
T  1174 aggagtgacaaatccaaacgacaccgttagataaatttcacctctttcatttaatttttttttaattcctttcatgtttagaacttcttctgattctga- 1272  T
Q  113 nnnnnnnnaatgaaatttaactacatnnnnnnnttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
            ||||||||||| |||||        ||||||||||||||| ||||    |||||||| ||||||||||| ||||||||||||    
T  1273 ttttttttaatgaaatttagctacacaaaaaaattacgttttattttactaggaacttattttaaaaagagagccgagcctcctatttca 1362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 46126 - 46047
Alignment:
Q  14 aggagtgacaaatccaaacgacactgttacataaatttcacctctttcacttaa-ttctttttaattcctttcatgttta 92  Q
    |||||||||||||||||||||||| |||   |||||||||||| |||||||||| || ||||||||||||||||| ||||    
T  46126 aggagtgacaaatccaaacgacaccgttggctaaatttcacctgtttcacttaatttttttttaattcctttcatattta 46047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 45995 - 45939
Alignment:
Q  146 ttacgttttattttattaggggtctattttaataagagagccgaacctcctatttca 202  Q
    |||| |||||||||| ||||||  |||||||| ||||||| ||| ||||||||||||    
T  45995 ttacattttattttactaggggcttattttaaaaagagagtcgagcctcctatttca 45939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University