View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3810_low_12 (Length: 317)

Name: NF3810_low_12
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3810_low_12
NF3810_low_12
[»] scaffold0015 (1 HSPs)
scaffold0015 (17-303)||(29979-30263)
[»] chr3 (5 HSPs)
chr3 (28-268)||(12996294-12996534)
chr3 (74-268)||(12992424-12992618)
chr3 (28-80)||(8838507-8838559)
chr3 (28-80)||(55312443-55312495)
chr3 (28-64)||(22444199-22444235)
[»] chr8 (2 HSPs)
chr8 (17-80)||(9942744-9942807)
chr8 (23-77)||(19996632-19996686)
[»] chr5 (2 HSPs)
chr5 (28-80)||(26498348-26498400)
chr5 (23-77)||(18482403-18482457)
[»] chr2 (2 HSPs)
chr2 (28-80)||(13133067-13133119)
chr2 (19-86)||(34977618-34977685)
[»] chr4 (1 HSPs)
chr4 (19-86)||(19799172-19799239)
[»] chr1 (1 HSPs)
chr1 (17-80)||(18008524-18008587)


Alignment Details
Target: scaffold0015 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 29979 - 30263
Alignment:
Q  17 atttgttatctaagttggggatgatagatatctaccaccctccaacttatggtgggatattacataatgagcatatagatactaatagttagccttagta 116  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||| |||  |||||||   ||||||||||||||||||||||||||||||||||||    
T  29979 atttgttatccaagttggggatgatagatatctaccacccgccaacttgtgggaggatattttgtaatgagcatatagatactaatagttagccttagta 30078  T
Q  117 taatagcttgcagtacaagttactgctgagtagtacaattgtatattacaagtatattgtatagtacactagcatagcctatataaaccatattgtgctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||    
T  30079 taatagcttgcagtacaagttactgctgagtagtacaattgtatattacaagaatattttatagtacactagcatagcctatataaaccatattgtactt 30178  T
Q  217 cacattcattaattcaatacaatgaaaattccttttctctctattcataatacatttcattgtagtcacggtctaagatggtgttgt 303  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30179 cacattcattaattcaatacaatgaaaattccttt--tctctattcataatacatttcattgtagtcatggtctaagatggtgttgt 30263  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 12996294 - 12996534
Alignment:
Q  28 aagttggggatgatagatatctaccaccctccaacttatggtgggatattacataatgagcatatagatactaatagttagccttagtataatagcttgc 127  Q
    ||||| |||||| | ||||| ||||||||| |||||| ||||||||||||||| |||||||||| | | | ||||||| |||||||  ||  ||||||||    
T  12996294 aagttagggatgcttgatatataccacccttcaacttgtggtgggatattacacaatgagcatacaaacattaatagtgagccttaacatgttagcttgc 12996393  T
Q  128 agtacaagttactgctgagtagtacaattgtatattacaagtatattgtatagtacactagcatagcctatataaaccatattgtgcttcacattcatta 227  Q
    |||||||||| ||| ||||||||||||||||||| |||| ||||  ||||||||||| ||| ||||  ||||||||||||| ||| ||| || || || |    
T  12996394 agtacaagttgctgttgagtagtacaattgtataatacatgtattctgtatagtacattaggataggttatataaaccataatgtactttacttttatca 12996493  T
Q  228 attcaatacaatgaaaattccttttctctctattcataata 268  Q
    ||| ||||||||||| |||  ||||||||||||||||||||    
T  12996494 atttaatacaatgaatatttattttctctctattcataata 12996534  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 12992424 - 12992618
Alignment:
Q  74 tattacataatgagcatatagatactaatagttagccttagtataatagcttgcagtacaagttactgctgagtagtacaattgtatattacaagtatat 173  Q
    ||||||| |||||||||| | | ||||||||| |||||||| ||  ||||||||| ||||||||| |||||| ||||||||||||||| |||| |||||     
T  12992424 tattacacaatgagcatacaaacactaatagtgagccttagcatgttagcttgcaatacaagttattgctgactagtacaattgtatagtacatgtatac 12992523  T
Q  174 tgtatagtacactagcatagcctatataaaccatattgtgcttcacattcattaattcaatacaatgaaaattccttttctctctattcataata 268  Q
    |||||| |||| ||| |||||  |||||||||||| ||| |||||| || || |||| ||||||||||| |||||||||||||  ||||||||||    
T  12992524 tgtatattacattaggatagctaatataaaccataatgtacttcacttttatcaatttaatacaatgaatattccttttctcttcattcataata 12992618  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 8838507 - 8838559
Alignment:
Q  28 aagttggggatgatagatatctaccaccctccaacttatggtgggatattaca 80  Q
    |||||||||||| ||||||| |||||||||||||||| ||| |||||||||||    
T  8838507 aagttggggatgttagatatttaccaccctccaacttgtggggggatattaca 8838559  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 55312443 - 55312495
Alignment:
Q  28 aagttggggatgatagatatctaccaccctccaacttatggtgggatattaca 80  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||||||||    
T  55312443 aagttggggatgttagacatctaccaccctccaacttgtggggggatattaca 55312495  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 22444199 - 22444235
Alignment:
Q  28 aagttggggatgatagatatctaccaccctccaactt 64  Q
    |||||||||||||| ||||||||||||||||||||||    
T  22444199 aagttggggatgattgatatctaccaccctccaactt 22444235  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 9942807 - 9942744
Alignment:
Q  17 atttgttatctaagttggggatgatagatatctaccaccctccaacttatggtgggatattaca 80  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||| | ||| |||||||||||    
T  9942807 atttgctatccaagttggggatgatagatatctaccagcctccaacatgtggggggatattaca 9942744  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 19996632 - 19996686
Alignment:
Q  23 tatctaagttggggatgatagatatctaccaccctccaacttatggtgggatatt 77  Q
    |||| |||||||||||| ||||||| |||||||||||||||| ||| ||||||||    
T  19996632 tatccaagttggggatgttagatatataccaccctccaacttgtggggggatatt 19996686  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 26498348 - 26498400
Alignment:
Q  28 aagttggggatgatagatatctaccaccctccaacttatggtgggatattaca 80  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||||||||    
T  26498348 aagttggggatgttagacatctaccaccctccaacttgtggggggatattaca 26498400  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 18482457 - 18482403
Alignment:
Q  23 tatctaagttggggatgatagatatctaccaccctccaacttatggtgggatatt 77  Q
    |||| |||||||||||| || |||||||||| |||||||||| ||| ||||||||    
T  18482457 tatccaagttggggatgttatatatctaccatcctccaacttgtggggggatatt 18482403  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 13133067 - 13133119
Alignment:
Q  28 aagttggggatgatagatatctaccaccctccaacttatggtgggatattaca 80  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||||||||    
T  13133067 aagttggggatgttagacatctaccaccctccaacttgtggggggatattaca 13133119  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 34977685 - 34977618
Alignment:
Q  19 ttgttatctaagttggggatgatagatatctaccaccctccaacttatggtgggatattacataatga 86  Q
    |||||||| ||||||||| |||| ||||||||||| ||||| | || | | |||||||||||||||||    
T  34977685 ttgttatccaagttggggttgatggatatctaccaacctcctatttgtagggggatattacataatga 34977618  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19799239 - 19799172
Alignment:
Q  19 ttgttatctaagttggggatgatagatatctaccaccctccaacttatggtgggatattacataatga 86  Q
    |||||||| ||||||||| || ||||||| ||||| ||||||||||  || ||||||||||| |||||    
T  19799239 ttgttatccaagttggggttgttagatatataccaacctccaacttgcggggggatattacacaatga 19799172  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 18008524 - 18008587
Alignment:
Q  17 atttgttatctaagttggggatgatagatatctaccaccctccaacttatggtgggatattaca 80  Q
    |||||||||| |||| || ||||||| |||||||||| |||||||||| | | |||||||||||    
T  18008524 atttgttatccaagtcggagatgatatatatctaccagcctccaacttgtagggggatattaca 18008587  T

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