View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3810_low_14 (Length: 284)
Name: NF3810_low_14
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_14 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 8412700 - 8412455
Alignment:
| Q |
19 |
caaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
118 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412700 |
caaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
8412601 |
T |
|
| Q |
119 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8412600 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaaacggggaaggtgc |
8412501 |
T |
|
| Q |
219 |
accacttatggctatgaaactgtcctctgctcttttattctctgct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412500 |
accacttatggctatgaaactgtcctctgctcttttattctctgct |
8412455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 8434798 - 8434553
Alignment:
| Q |
19 |
caaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434798 |
caaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
8434699 |
T |
|
| Q |
119 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8434698 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaaacggggaaggtgc |
8434599 |
T |
|
| Q |
219 |
accacttatggctatgaaactgtcctctgctcttttattctctgct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434598 |
accacttatggctatgaaactgtcctctgctcttttattctctgct |
8434553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 8394749 - 8394994
Alignment:
| Q |
19 |
caaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
118 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394749 |
caaaagcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
8394848 |
T |
|
| Q |
119 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8394849 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaaacggggaaggtgc |
8394948 |
T |
|
| Q |
219 |
accacttatggctatgaaactgtcctctgctcttttattctctgct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394949 |
accacttatggctatgaaactgtcctctgctcttttattctctgct |
8394994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 39 - 264
Target Start/End: Complemental strand, 8406560 - 8406335
Alignment:
| Q |
39 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8406560 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8406461 |
T |
|
| Q |
139 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaac |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8406460 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaac |
8406361 |
T |
|
| Q |
239 |
tgtcctctgctcttttattctctgct |
264 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8406360 |
tgtcctctgctcttttattctctgct |
8406335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 264
Target Start/End: Original strand, 8395012 - 8395237
Alignment:
| Q |
39 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395012 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8395111 |
T |
|
| Q |
139 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaac |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8395112 |
ctattaaactcaataaaaatgattactctcactgctacaaccatgtctggagttgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaac |
8395211 |
T |
|
| Q |
239 |
tgtcctctgctcttttattctctgct |
264 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8395212 |
tgtcctctgctcttttattctctgct |
8395237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8431723 - 8431496
Alignment:
| Q |
19 |
caaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaac |
118 |
Q |
| |
|
|||||||||| ||||| |||||| || ||| |||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8431723 |
caaaagcattctacaaattctaaagccacaattcaactcta--cagttttagaagctgtatcagacagaatagaaatgcatcacaacattggcgaac--- |
8431629 |
T |
|
| Q |
119 |
gtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgc |
218 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
8431628 |
gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatgtctggtgttgcagctgtcacaagtggggaagttgc |
8431529 |
T |
|
| Q |
219 |
accacttatggctatgaaactgtcctctgctct |
251 |
Q |
| |
|
||||||| ||||| ||||||| || |||||||| |
|
|
| T |
8431528 |
accacttttggctctgaaactatcttctgctct |
8431496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 8417882 - 8417746
Alignment:
| Q |
58 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
157 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||||||||||||||| | |||| ||||||||| ||||| | |||||| || || || || || | |
|
|
| T |
8417882 |
tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaaca |
8417783 |
T |
|
| Q |
158 |
tgattactctcactgctacaaccatgtctggtgttgc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8417782 |
tgattactctcactgctacaaccatgtctggtcttgc |
8417746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 8375339 - 8375475
Alignment:
| Q |
58 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
157 |
Q |
| |
|
|||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8375339 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca |
8375438 |
T |
|
| Q |
158 |
tgattactctcactgctacaaccatgtctggtgttgc |
194 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8375439 |
tgattactcttactgctacaaccatgtctggtgttgc |
8375475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 8439764 - 8439628
Alignment:
| Q |
58 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
157 |
Q |
| |
|
|||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||| ||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8439764 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaaca |
8439665 |
T |
|
| Q |
158 |
tgattactctcactgctacaaccatgtctggtgttgc |
194 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8439664 |
tgattactcttactgctacaaccatgtctggtgttgc |
8439628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 8368931 - 8368812
Alignment:
| Q |
51 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
150 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8368931 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8368832 |
T |
|
| Q |
151 |
ataaatatgattactctcac |
170 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8368831 |
atcaacatgatcactctcac |
8368812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 8400479 - 8400598
Alignment:
| Q |
51 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
150 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8400479 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8400578 |
T |
|
| Q |
151 |
ataaatatgattactctcac |
170 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8400579 |
atcaacatgatcactctcac |
8400598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 8422056 - 8422175
Alignment:
| Q |
51 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
150 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8422056 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8422155 |
T |
|
| Q |
151 |
ataaatatgattactctcac |
170 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8422156 |
atcaacatgatcactctcac |
8422175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 8404604 - 8404470
Alignment:
| Q |
53 |
aactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaat |
152 |
Q |
| |
|
||||||||||| | | ||| ||||||||||||||||| ||||||||| | ||| | || |||||||| |||| ||||| | ||| |||||||||| || |
|
|
| T |
8404604 |
aactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccat |
8404505 |
T |
|
| Q |
153 |
aaatatgattactctcactgctacaaccatgtctg |
187 |
Q |
| |
|
|| ||||| || ||||| ||| |||| ||||||| |
|
|
| T |
8404504 |
caacatgataacactcacagcttcaacaatgtctg |
8404470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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