View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_low_17 (Length: 254)
Name: NF3810_low_17
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 28726083 - 28725857
Alignment:
| Q |
10 |
aagaatataaagaaaacactaagaatacacaccagaataattaaagatagaaacaccaaaaataacaaatggacactaaaatagatcaaattttaacttg |
109 |
Q |
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| T |
28726083 |
aagaatataaagaaaacactaagaatacacaccagaataattaaagatagaaacaccaaaaataacaaatggacactaaaatagatcaaattttaacttg |
28725984 |
T |
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| Q |
110 |
aaacaaagtatctattttcatgagcttatgacttctgataattgnnnnnnnttaaatcttattggggcctctttgagaaggaatagcgatgatattggtt |
209 |
Q |
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| T |
28725983 |
aaacaaagtatctattttcatgagcttatgacttttgataattgaaaaaaattaaatcttattggggactctttgagaaggaatagcgatgatattggtt |
28725884 |
T |
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| Q |
210 |
aaattaccatgctcagttggtctttta |
236 |
Q |
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| T |
28725883 |
aaattaccatgctcagttggtctttta |
28725857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 28736959 - 28736894
Alignment:
| Q |
171 |
ttggggcctctttgagaaggaatagcgatgatattggttaaattaccatgctcagttggtctttta |
236 |
Q |
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|||||||||||||||||||||| | | |||||||||||||||| |||||||||||||||||| |
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| T |
28736959 |
ttggggcctctttgagaaggaacaataacactattggttaaattaccttgctcagttggtctttta |
28736894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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