View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_low_20 (Length: 244)
Name: NF3810_low_20
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_20 |
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| [»] scaffold0793 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 705262 - 705039
Alignment:
| Q |
1 |
cattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcggtattttagaatgnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
705262 |
cattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcggtattttagaatgaaaaaaaaaaaaaaa |
705163 |
T |
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| Q |
101 |
nnnctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgta |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
705162 |
aa-ctacttacattatgtaagatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgta |
705064 |
T |
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| Q |
201 |
gtacggtagggaatctaggtccata |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
705063 |
gtacggtagggaatctaggtccata |
705039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 731393 - 731605
Alignment:
| Q |
1 |
cattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcggtattttagaatgnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731393 |
cattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcggtattttagaatgaaaaaaaaaaa---- |
731488 |
T |
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| Q |
101 |
nnnctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgta |
200 |
Q |
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| T |
731489 |
---ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgta |
731585 |
T |
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| Q |
201 |
gtacggtagggaatctaggt |
220 |
Q |
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| T |
731586 |
gtacggtagggaatctaggt |
731605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 687793 - 687672
Alignment:
| Q |
104 |
ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
203 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
687793 |
ctacttacattatgtaagatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
687694 |
T |
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| Q |
204 |
cggtagggaatctaggtccata |
225 |
Q |
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|||||||||||||||||||||| |
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| T |
687693 |
cggtagggaatctaggtccata |
687672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2578 - 2360
Alignment:
| Q |
1 |
cattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcggtattttagaatgnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
2578 |
cattcacgcaattaatacatcgaagaccgttaaattaagatctgaattcggaaggtccatatttcaagctcggtattttagaatgaaaaaaaaaaaa--- |
2482 |
T |
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| Q |
101 |
nnnctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgta |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2481 |
---ctacttacattatgtacgatccgatttgaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgta |
2385 |
T |
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| Q |
201 |
gtacggtagggaatctaggtccata |
225 |
Q |
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||| ||||||||||||||||||||| |
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| T |
2384 |
gtatggtagggaatctaggtccata |
2360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 3367 - 3246
Alignment:
| Q |
104 |
ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3367 |
ctacttacattatgtacgatccgatttcaactcaacggtcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatcccatgttgtagta |
3268 |
T |
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| Q |
204 |
cggtagggaatctaggtccata |
225 |
Q |
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| T |
3267 |
cggtagggaatctaggtccata |
3246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 5045966 - 5046014
Alignment:
| Q |
142 |
tcactgatgtgctaactacgtgaatttgtgactgcagtaaatccaaatc |
190 |
Q |
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| T |
5045966 |
tcactgatatgctaactacgtgaatttgtgaccgcatcagatccaaatc |
5046014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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