View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3810_low_3 (Length: 494)

Name: NF3810_low_3
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3810_low_3
NF3810_low_3
[»] chr4 (13 HSPs)
chr4 (213-474)||(2805644-2805916)
chr4 (19-175)||(2806232-2806388)
chr4 (216-257)||(41236056-41236097)
chr4 (175-214)||(2805935-2805974)
chr4 (216-259)||(45891351-45891394)
chr4 (222-260)||(12799982-12800020)
chr4 (217-259)||(26740820-26740862)
chr4 (222-259)||(48622282-48622319)
chr4 (216-257)||(49250079-49250120)
chr4 (216-257)||(55322981-55323022)
chr4 (222-257)||(34118940-34118975)
chr4 (216-259)||(50328410-50328453)
chr4 (216-257)||(16067812-16067853)
[»] chr8 (8 HSPs)
chr8 (216-259)||(4993269-4993312)
chr8 (217-256)||(5957038-5957077)
chr8 (216-259)||(30203408-30203451)
chr8 (216-259)||(39108575-39108618)
chr8 (216-259)||(40740744-40740787)
chr8 (216-257)||(3727180-3727221)
chr8 (216-253)||(10361169-10361206)
chr8 (216-257)||(19174121-19174162)
[»] chr6 (6 HSPs)
chr6 (216-259)||(17515366-17515409)
chr6 (216-260)||(9429602-9429646)
chr6 (216-259)||(3337686-3337729)
chr6 (216-259)||(24548021-24548064)
chr6 (216-258)||(30323079-30323121)
chr6 (216-257)||(4844465-4844506)
[»] chr5 (9 HSPs)
chr5 (216-255)||(13951137-13951176)
chr5 (216-257)||(14309940-14309981)
chr5 (216-260)||(18334421-18334465)
chr5 (216-260)||(40298292-40298336)
chr5 (216-259)||(15591692-15591735)
chr5 (216-255)||(42179824-42179863)
chr5 (216-257)||(19961601-19961642)
chr5 (216-260)||(10083770-10083814)
chr5 (222-258)||(14575963-14575999)
[»] chr7 (5 HSPs)
chr7 (216-257)||(17354419-17354460)
chr7 (216-257)||(43251912-43251953)
chr7 (223-257)||(46479797-46479831)
chr7 (216-260)||(20009687-20009731)
chr7 (223-259)||(42306308-42306344)
[»] chr1 (7 HSPs)
chr1 (216-260)||(51295753-51295797)
chr1 (217-260)||(11248721-11248764)
chr1 (216-259)||(51050087-51050130)
chr1 (217-259)||(33828109-33828151)
chr1 (217-259)||(33839814-33839856)
chr1 (216-257)||(44595738-44595779)
chr1 (232-260)||(46587789-46587817)
[»] scaffold0006 (1 HSPs)
scaffold0006 (216-259)||(50639-50682)
[»] chr2 (6 HSPs)
chr2 (216-259)||(44966060-44966103)
chr2 (216-257)||(40711211-40711252)
chr2 (216-260)||(25220801-25220845)
chr2 (216-260)||(27269135-27269179)
chr2 (228-259)||(41542795-41542826)
chr2 (216-258)||(44022200-44022242)
[»] chr3 (6 HSPs)
chr3 (216-258)||(41519534-41519576)
chr3 (216-260)||(24657261-24657305)
chr3 (222-257)||(28554219-28554254)
chr3 (216-257)||(28392178-28392219)
chr3 (216-260)||(12789906-12789950)
chr3 (216-260)||(38627776-38627820)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 213 - 474
Target Start/End: Complemental strand, 2805916 - 2805644
Alignment:
Q  213 tagttaatctttaactttttaatcaattaaatgcacaaaattttagaannnnnnnnnn----agaatttttatcatatgtcttaatgatacaagttaaca 308  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||               || ||| ||| |||||||||||||||||||||||||||    
T  2805916 tagttaatctttaactttttaatcaattaaatgcacaaaactttagatttttttttttttttaggattcttaacatatgtcttaatgatacaagttaaca 2805817  T
Q  309 ctacctattattaaattacttctacttcactcgatataagtttaggatctccaacttctttaatctctagttcaaactaattgaaaaa-------agact 401  Q
    ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  2805816 ctatccattgttaaattacttctacttcactcgatataagtttaggatctccaacttctttaatctctagttcaaactaattgaaaaagattgtcagact 2805717  T
Q  402 attttgcctcaactcaatttacctaagtggaatcgactcgtaatatcaaatgattttgcctaaaatttcagaa 474  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||    
T  2805716 attttgcctcaactcaatttacctaagtggaatcggctggtaatatcaagtgactttgcctaaaatttcagaa 2805644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 2806388 - 2806232
Alignment:
Q  19 cacagatcgaaaattacaagtagcccaaccaaaagccaatttgcttttacactgccactgattttgcaagttgtctccctaacaaaagaacaattttacc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2806388 cacagatcgaaaattacaagtagcccaaccaaaagccaatttgcttttacactgccactgattttgcaagttgtctccctaacaaaagaacaattttagc 2806289  T
Q  119 attattcatgcaaccttctttccttaaattcttaccgtcaatcataaacttgcaact 175  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2806288 attattcatgcaaccttctttccttaaattcttaccgtgaatcataaacttgcaact 2806232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 41236097 - 41236056
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  41236097 ttaatctttaactttttaataaattaaatgcacaaaatttta 41236056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 2805974 - 2805935
Alignment:
Q  175 tatttgaatcaaactacctgattcgaaatgacaacagtta 214  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2805974 tatttgaatcaaactagctgattcgaaatgacaacagtta 2805935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 45891351 - 45891394
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  45891351 ttaatctttaactttttaatgaattaattgcacaaaattttaga 45891394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 12800020 - 12799982
Alignment:
Q  222 tttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  12800020 tttaactttttaatcatttaaatgcacaaaattttagaa 12799982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 26740820 - 26740862
Alignment:
Q  217 taatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  26740820 taatctttaactttttaatgaattgaatgcacaaaattttaga 26740862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 48622319 - 48622282
Alignment:
Q  222 tttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||| |||||||||||||||||||||    
T  48622319 tttaactttttaatcatttaaatgcacaaaattttaga 48622282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 49250120 - 49250079
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  49250120 ttaatctttaactttttaatgaattgaatgcacaaaatttta 49250079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 55323022 - 55322981
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  55323022 ttaatctttaactttttaatgaattgaatgcacaaaatttta 55322981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 34118975 - 34118940
Alignment:
Q  222 tttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||||||||| |||||||||||||||||||    
T  34118975 tttaactttttaatcatttaaatgcacaaaatttta 34118940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 50328453 - 50328410
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| ||||  |||||||||||||||||    
T  50328453 ttaatctttaactttttaatgaattggatgcacaaaattttaga 50328410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 16067853 - 16067812
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||||||||||||| |||| ||| ||||||||||||    
T  16067853 ttaatctttaactttttaatgaattgaatacacaaaatttta 16067812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 4993312 - 4993269
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  4993312 ttaatctttaactttttaatgaattaaatgcacaaaattttaga 4993269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 5957077 - 5957038
Alignment:
Q  217 taatctttaactttttaatcaattaaatgcacaaaatttt 256  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  5957077 taatctttaactttttaatgaattgaatgcacaaaatttt 5957038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 30203408 - 30203451
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  30203408 ttaatctttaactttttaatgagttgaatgcacaaaattttaga 30203451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 39108618 - 39108575
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||| |||||| |||||||||||||| |||||||||||||||||    
T  39108618 ttaaactttaattttttaatcaattatatgcacaaaattttaga 39108575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 40740744 - 40740787
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  40740744 ttaatctttaactttttaatgatttgaatgcacaaaattttaga 40740787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 3727221 - 3727180
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||| ||||||||| |||| ||||||||||||||||    
T  3727221 ttaatctttagctttttaatgaattgaatgcacaaaatttta 3727180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 10361206 - 10361169
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaat 253  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  10361206 ttaatatttaactttttaatcatttaaatgcacaaaat 10361169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 19174121 - 19174162
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  19174121 ttaatatttaactttttaatcatttaaatgcataaaatttta 19174162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 17515409 - 17515366
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  17515409 ttaatctttaactttttaatcaattaaatgtacaaaattttaga 17515366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 9429646 - 9429602
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  9429646 ttaatctttaattttttaatcaattaaatgcataaaattttagaa 9429602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 3337686 - 3337729
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  3337686 ttaatcgttaactttttaatcaattaaatgcataaaattttaga 3337729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 24548064 - 24548021
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| |||| |||||||| |||||||||    
T  24548064 ttaatctttaactttttaatgaattgaatgcacataattttaga 24548021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 30323121 - 30323079
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttag 258  Q
    |||||||||||||||||||| |||| ||||||| |||||||||    
T  30323121 ttaatctttaactttttaatgaattgaatgcactaaattttag 30323079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 4844465 - 4844506
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  4844465 ttaatatttaactttttaataaattgaatgcacaaaatttta 4844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 13951176 - 13951137
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattt 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13951176 ttaatctttaactttttaatcaattaaatgcacaaaattt 13951137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 14309981 - 14309940
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  14309981 ttaaactttaactttttaatcaattaaatgcacaaaatttta 14309940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 18334465 - 18334421
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||    
T  18334465 ttaatattaaactttttaatcatttaaatgcacaaaattttagaa 18334421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 40298336 - 40298292
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||| ||||||| |||| |||||||||||||||||||    
T  40298336 ttaatctttaacattttaatgaattgaatgcacaaaattttagaa 40298292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 15591735 - 15591692
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||    
T  15591735 ttaatctttaattttttaatgaattgaatgcacaaaattttaga 15591692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 42179863 - 42179824
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattt 255  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  42179863 ttaatctttaactttttaattaattaaatgcataaaattt 42179824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 19961601 - 19961642
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||||||||| |||||||| |||| ||||||||||||||||    
T  19961601 ttaatctttaattttttaataaattgaatgcacaaaatttta 19961642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 10083770 - 10083814
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||  ||||||| ||||||||||||||||||| ||||    
T  10083770 ttaatctttaatgttttaatgaattaaatgcacaaaatttaagaa 10083814  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 14575999 - 14575963
Alignment:
Q  222 tttaactttttaatcaattaaatgcacaaaattttag 258  Q
    |||||||||||||| |||| |||||||||||||||||    
T  14575999 tttaactttttaatgaattgaatgcacaaaattttag 14575963  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 17354419 - 17354460
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  17354419 ttaatctttaactttttaatcaattaaatgcataaaatttta 17354460  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 43251953 - 43251912
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  43251953 ttaatctttaattttttaatcaattaaatgcataaaatttta 43251912  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 46479831 - 46479797
Alignment:
Q  223 ttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||||||||||||| |||||||||||||||||||    
T  46479831 ttaactttttaatcatttaaatgcacaaaatttta 46479797  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 20009731 - 20009687
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    ||||||| ||||||||| || |||| |||||||||||||||||||    
T  20009731 ttaatctgtaacttttttataaattgaatgcacaaaattttagaa 20009687  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 42306344 - 42306308
Alignment:
Q  223 ttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  42306344 ttaactttttaatgaattgaatgcacaaaattttaga 42306308  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 51295797 - 51295753
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||||||||||| |||| |||||||||||||||||||    
T  51295797 ttaatctttaactttttaatgaattgaatgcacaaaattttagaa 51295753  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 11248764 - 11248721
Alignment:
Q  217 taatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  11248764 taatatttaactttttaatcatttaaatgcacaaaattttagaa 11248721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 51050130 - 51050087
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||    
T  51050130 ttaatcgttaattttttaatcaattaaatgcacaatattttaga 51050087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 33828151 - 33828109
Alignment:
Q  217 taatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||||||||||||||| |||| |||||| |||||||||||    
T  33828151 taatctttaactttttaataaattgaatgcataaaattttaga 33828109  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 33839814 - 33839856
Alignment:
Q  217 taatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||||||||||||||| |||| |||||| |||||||||||    
T  33839814 taatctttaactttttaataaattgaatgcataaaattttaga 33839856  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 44595779 - 44595738
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    |||| ||||||||||||||| |||| ||||||||||||||||    
T  44595779 ttaaactttaactttttaatgaattgaatgcacaaaatttta 44595738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 46587789 - 46587817
Alignment:
Q  232 taatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||||||||||||||||||||    
T  46587789 taatcaattaaatgcacaaaattttagaa 46587817  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 50682 - 50639
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  50682 ttaatctctaagtttttaatcaattaaatgcacaaaattttaga 50639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 44966103 - 44966060
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttaga 259  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  44966103 ttaatctttaactttttaatgaattgaatgcacaaaattttaga 44966060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 40711252 - 40711211
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  40711252 ttaatttttaactttttaatgaattaaatgcacaaaatttta 40711211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 25220801 - 25220845
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||    
T  25220801 ttaatctttaattttttaatcaattaaattcataaaattttagaa 25220845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 27269179 - 27269135
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  27269179 ttaacctttaactttttaatgaattagatgcacaaaattttagaa 27269135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 259
Target Start/End: Complemental strand, 41542826 - 41542795
Alignment:
Q  228 tttttaatcaattaaatgcacaaaattttaga 259  Q
    ||||||||||||||||||||||||||||||||    
T  41542826 tttttaatcaattaaatgcacaaaattttaga 41542795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 44022242 - 44022200
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttag 258  Q
    ||||| |||||||||||||| |||| |||||||||||||||||    
T  44022242 ttaatttttaactttttaattaattgaatgcacaaaattttag 44022200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 41519576 - 41519534
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttag 258  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  41519576 ttaatctttaattttttaatcaattaaatgcacaaagttttag 41519534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 24657305 - 24657261
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  24657305 ttaatctttaactttttaataaattgaatacacaaaattttagaa 24657261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 28554219 - 28554254
Alignment:
Q  222 tttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28554219 tttaactttttgatcaattaaatgcacaaaatttta 28554254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 28392219 - 28392178
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaatttta 257  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  28392219 ttaatctttaactttttaatgtattgaatgcacaaaatttta 28392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 12789950 - 12789906
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||    
T  12789950 ttaatctttaactttttaataaattgaatacataaaattttagaa 12789906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 38627776 - 38627820
Alignment:
Q  216 ttaatctttaactttttaatcaattaaatgcacaaaattttagaa 260  Q
    ||||| |||||||||||||||| ||||||| | ||||||||||||    
T  38627776 ttaatatttaactttttaatcatttaaatgtataaaattttagaa 38627820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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