View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_low_4 (Length: 455)
Name: NF3810_low_4
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 32643316 - 32643738
Alignment:
| Q |
17 |
cagagagcgttgcatatataaatatggtattttactaatataaaaccacaactcgccacatctcactttcttctaacgtccctttaacctgtcatcatca |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643316 |
cagagagcgttgtatatataaatatggtattttactaatataaaaccataactcgccacatctcactttcttctaacgtccctttaacctgtcatcatca |
32643415 |
T |
|
| Q |
117 |
tggataggtctttgttcgtcacacagactcctatcaccactgatgagcttaacattttttaccaaattgatcgtgagctattttgttttttgatcttcaa |
216 |
Q |
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|||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643416 |
tggataagcctttgtttgtcacacagactcctatcaccactgatgagcttaaccttttttaccaaattgatcgtgagctattttgttttttgatcttcaa |
32643515 |
T |
|
| Q |
217 |
acttcaccacgaggtgactcaatctcttctagtcatggctctctggctttggcttgaaaaagttgggtaccataaccttgtctcaaaagtaacagttcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32643516 |
acttcaccacgaggtgactcaatctcttctagtcatggctctctggctttggcttgaaaaagttgggtaccataaccttgtctcaaaagtaacacttcta |
32643615 |
T |
|
| Q |
317 |
caaggcactgttatcaatgctcttgtgaatgaagctgtaacatgcttgcaaattttgggaaaggatgaacctgccatcccaattgggggtggattgccct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643616 |
caaggcactgttatcaatgctcttgtgaatgaagctgtaacttgcttgcaaattttgggaaaggatgaacctgccatcccaattgggggtggattgccct |
32643715 |
T |
|
| Q |
417 |
tgactacaaggctcgtgaaaaag |
439 |
Q |
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|||| |||||||||||||||||| |
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| T |
32643716 |
tgaccacaaggctcgtgaaaaag |
32643738 |
T |
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