View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_low_5 (Length: 448)
Name: NF3810_low_5
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 13625871 - 13626259
Alignment:
| Q |
1 |
taagtttggagacattagggttagaagagagagaaatggaggaagaagctttatcaaagagaagagcacgaactctgagttgaagatgaatgtgaagagt |
100 |
Q |
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| T |
13625871 |
taagtttggagacattagggttagaagagagagaaatggaggaagcagctttatcaaagagaagagcacgaactctgagttgaagatgaatgtgaagagt |
13625970 |
T |
|
| Q |
101 |
agatttggaagaatcggttttcatgaaggaatcccaagaagaaggtgaagagagaaaaggtacgaagtttgtgtaattggaatcgccgagccattttcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13625971 |
agatttggaagaatcggttttcatgaaggaatcccaagaagaaggtgaagagagaaaaggtacgaagtttgtataattggaatcgccgagccattttcgc |
13626070 |
T |
|
| Q |
201 |
catactccatgggtttcgaggttgcgagcaaggtcgtagcctcgtccgtcagtgcccagtagagacatggctgcttttcgtctgctcactctctaatttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
13626071 |
catactccatgggtttcgaggttgcgagcaaggtcgtagccgcgtccgtcagtgcccagtagagacatggctgcttttcgtttgctcactctctgatttg |
13626170 |
T |
|
| Q |
301 |
ttcatctgaggacttcgtggtttttgactttaatttgactatccaactcacattcgatatcctccaaagtcatttaactcatgtaagaatcc |
392 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
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| T |
13626171 |
ttcatgtgaggacttcgtggtttttgactttaatttgactatccaactcacattcgatatcc---attgtgatttaactcatgtaagaatcc |
13626259 |
T |
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