View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_low_7 (Length: 411)
Name: NF3810_low_7
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_7 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 2137297 - 2137690
Alignment:
| Q |
18 |
taaactaccggcagcatcattgatcactaatagaaccagttttggtgaagcttaaacaacatagctttctctaaggcactcatacacagaaggtccaaaa |
117 |
Q |
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| T |
2137297 |
taaactacccgcagcatcattgatcactaatagaaccagttttggtgaagcttaaacaacatagctttctctaaggcactcatacacagaaggtccaaaa |
2137396 |
T |
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| Q |
118 |
tcacgctctaaggctcatgttaaatcaagccatgaatgaaacgggtgggagggttgcatcatttggaaccaaggacaaggaggaacaaccctctaaatcc |
217 |
Q |
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| T |
2137397 |
tcacgctctaaggctcgtgttaaatcaagccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggacaaggaggaacaaccctctaaatcc |
2137496 |
T |
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| Q |
218 |
aaatgcaattgttaatgtatgcatctatctatctattacatcaaattgaacataaccaatttggccgtcatagttttccagaaatttgataacaaagaat |
317 |
Q |
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| T |
2137497 |
aaatgcaattgttaatgtatgcatctatctatctattacatcaaattgaacataaccaatttggtcgtcatagttttccagaaatttgataacaaagaat |
2137596 |
T |
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| Q |
318 |
ggacaatgcagttttttgggggcattgtgtgtgatactgtgtattttctttcctatttgaaacatctcttatattttaaactgtaatatgtctt |
411 |
Q |
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| T |
2137597 |
ggacaatgcagttttttgggggcattgtgtgtgatactgtgtattttctttcctttttgaaacatctcttatattttgaactgtaatatgtctt |
2137690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 2128017 - 2128193
Alignment:
| Q |
37 |
ttgatcactaatagaaccagttttggtgaagcttaaacaacatagctttctctaaggcactcatacacagaaggtccaaaatcacgctctaaggctcatg |
136 |
Q |
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| T |
2128017 |
ttgatcactaatagaatcagttttggtgaagcttaaacaacatagctttctctagggcactcatacaaagaaggtccaaaatcacgctctaaggctcgtg |
2128116 |
T |
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| Q |
137 |
ttaaatcaagccatgaatgaaacgggtgggagggttgcatcatttggaaccaaggacaaggaggaacaaccctctaa |
213 |
Q |
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| T |
2128117 |
ttaaatcaagccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggataaggaggaacaaccctctaa |
2128193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 2081273 - 2081176
Alignment:
| Q |
96 |
ctcatacacagaaggtccaaaatcacgctctaaggctcatgttaaatcaagccatgaatgaaacgggtggga-gggttgcatcatttggaaccaagga |
192 |
Q |
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| T |
2081273 |
ctcatacacagaaggtccaaaatcaagctctaacgctcgtgtaaaatcacgctgttaatgaaatgggtgggacattttgcatcatttggaaccaagga |
2081176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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