View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3810_low_9 (Length: 379)
Name: NF3810_low_9
Description: NF3810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3810_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 27 - 358
Target Start/End: Complemental strand, 35443858 - 35443538
Alignment:
| Q |
27 |
attagagacataataatacactttgataagtgcgtaagttatcgcatgaatccgtgtccattctctaattatctgcacgtttttaattctcaaatctatt |
126 |
Q |
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| T |
35443858 |
attagaggcataataatatactttgataagtgcgtaagttatcgcatgaatccgtgtccattctctaattatctgcacgtttttaattctcaaatctatt |
35443759 |
T |
|
| Q |
127 |
tttcttcttgtatagttttctgtcacgtcttaaggacaaaaaacaattaaaattttaaattcattaaataattgatgtatctgacatatatttgacatat |
226 |
Q |
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| T |
35443758 |
tttcttcttgtatagttttctgtcaggtcttaaggacaaaaaacaattaaaattttaaattcattaaataattgatgtatctgacatat----------- |
35443670 |
T |
|
| Q |
227 |
atttcagattagatacatcaattatctaataaatctaaaatgtcaaactgtgaattataatatctaaataaaaatgttatttattcaaaaagtcaaataa |
326 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35443669 |
atttcagactagatacatcaattatctaataaatctaaaaagtcaaactgtgaattagaatatctaaataaaaatgttatttattcaaaaagttaaataa |
35443570 |
T |
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| Q |
327 |
tttgattttgtaccttgaatatataattttat |
358 |
Q |
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| T |
35443569 |
tttgattttgtacattgaatatataattttat |
35443538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 35922163 - 35922124
Alignment:
| Q |
167 |
aaacaattaaaattttaaattcattaaataattgatgtat |
206 |
Q |
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| T |
35922163 |
aaacaattgaatttttaaattcattaaataattgatgtat |
35922124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 6500044 - 6500011
Alignment:
| Q |
239 |
atacatcaattatctaataaatctaaaatgtcaa |
272 |
Q |
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| T |
6500044 |
atacatcaattatttaataaatctaaaatgtcaa |
6500011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 26863129 - 26863168
Alignment:
| Q |
178 |
attttaaattcattaaataattgatgtatctgacatatat |
217 |
Q |
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| T |
26863129 |
attttaaattcattgaataattgatgtatctgatatatat |
26863168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 12018527 - 12018490
Alignment:
| Q |
179 |
ttttaaattcattaaataattgatgtatctgacatata |
216 |
Q |
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| T |
12018527 |
ttttagattcattaaataattgatgtatctgaaatata |
12018490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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