View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3811_high_1 (Length: 377)

Name: NF3811_high_1
Description: NF3811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3811_high_1
NF3811_high_1
[»] chr8 (13 HSPs)
chr8 (114-370)||(23351744-23351999)
chr8 (3-122)||(23352286-23352405)
chr8 (11-54)||(3597670-3597713)
chr8 (14-48)||(15779999-15780033)
chr8 (14-48)||(15790588-15790622)
chr8 (11-49)||(22663952-22663990)
chr8 (11-48)||(19927846-19927883)
chr8 (11-48)||(20381698-20381735)
chr8 (11-48)||(24647095-24647132)
chr8 (3-43)||(18773414-18773454)
chr8 (11-43)||(19225879-19225911)
chr8 (11-43)||(19419346-19419378)
chr8 (11-43)||(30324554-30324586)
[»] chr3 (11 HSPs)
chr3 (223-370)||(14008597-14008744)
chr3 (241-295)||(14131010-14131064)
chr3 (11-48)||(15834299-15834336)
chr3 (11-48)||(22141553-22141590)
chr3 (11-54)||(18140839-18140882)
chr3 (14-48)||(13120775-13120809)
chr3 (11-48)||(12962417-12962454)
chr3 (3-48)||(14008383-14008428)
chr3 (11-43)||(7803755-7803787)
chr3 (3-54)||(14131245-14131297)
chr3 (11-43)||(17909252-17909284)
[»] scaffold1993 (2 HSPs)
scaffold1993 (239-355)||(683-799)
scaffold1993 (4-42)||(987-1025)
[»] chr7 (15 HSPs)
chr7 (255-370)||(14303432-14303547)
chr7 (2-54)||(14303740-14303792)
chr7 (11-48)||(13031404-13031441)
chr7 (13-55)||(9709176-9709218)
chr7 (11-48)||(332453-332490)
chr7 (11-48)||(22577339-22577376)
chr7 (11-54)||(14427316-14427359)
chr7 (14-48)||(21696156-21696190)
chr7 (11-48)||(4428368-4428405)
chr7 (11-48)||(4822234-4822271)
chr7 (11-48)||(13649544-13649581)
chr7 (11-48)||(16315897-16315934)
chr7 (11-43)||(9160698-9160730)
chr7 (11-47)||(13259946-13259982)
chr7 (11-43)||(15887583-15887615)
[»] chr1 (11 HSPs)
chr1 (239-370)||(20910459-20910590)
chr1 (11-54)||(36134932-36134975)
chr1 (8-49)||(18516479-18516520)
chr1 (2-45)||(20910228-20910271)
chr1 (14-48)||(20883105-20883139)
chr1 (14-48)||(22643716-22643750)
chr1 (14-48)||(23067767-23067801)
chr1 (11-41)||(29216501-29216531)
chr1 (11-48)||(19718314-19718351)
chr1 (11-43)||(7680154-7680186)
chr1 (11-43)||(20953698-20953730)
[»] scaffold1948 (1 HSPs)
scaffold1948 (11-54)||(235-278)
[»] scaffold1260 (1 HSPs)
scaffold1260 (11-54)||(2077-2120)
[»] scaffold0414 (1 HSPs)
scaffold0414 (11-54)||(6394-6437)
[»] scaffold0011 (1 HSPs)
scaffold0011 (11-54)||(134651-134694)
[»] chr6 (12 HSPs)
chr6 (11-54)||(22802925-22802968)
chr6 (11-48)||(20112015-20112052)
chr6 (14-54)||(21625909-21625949)
chr6 (11-54)||(21235734-21235777)
chr6 (14-48)||(17782051-17782085)
chr6 (14-48)||(27373692-27373726)
chr6 (14-48)||(27464045-27464079)
chr6 (11-43)||(12359039-12359071)
chr6 (14-54)||(19483589-19483629)
chr6 (11-43)||(20059748-20059780)
chr6 (239-295)||(25604362-25604418)
chr6 (239-295)||(25612700-25612756)
[»] chr5 (7 HSPs)
chr5 (11-54)||(30743813-30743856)
chr5 (3-43)||(20797037-20797077)
chr5 (11-48)||(88754-88791)
chr5 (11-43)||(1110046-1110078)
chr5 (11-43)||(20561654-20561686)
chr5 (11-43)||(23405785-23405817)
chr5 (11-43)||(24927041-24927073)
[»] scaffold0607 (1 HSPs)
scaffold0607 (11-49)||(7726-7764)
[»] chr4 (6 HSPs)
chr4 (13-55)||(13575443-13575485)
chr4 (8-49)||(18776759-18776800)
chr4 (5-49)||(14356539-14356583)
chr4 (11-54)||(15140028-15140070)
chr4 (4-43)||(19887659-19887698)
chr4 (11-48)||(19620368-19620405)
[»] scaffold0207 (1 HSPs)
scaffold0207 (11-48)||(21451-21488)
[»] scaffold0315 (1 HSPs)
scaffold0315 (11-46)||(18720-18755)
[»] scaffold0056 (1 HSPs)
scaffold0056 (11-46)||(34077-34112)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-54)||(4886-4929)
[»] scaffold0004 (1 HSPs)
scaffold0004 (11-54)||(30134-30177)
[»] chr2 (5 HSPs)
chr2 (11-46)||(22454254-22454289)
chr2 (11-48)||(18937348-18937385)
chr2 (13-54)||(22318415-22318456)
chr2 (11-43)||(21171679-21171711)
chr2 (11-43)||(28731142-28731174)
[»] scaffold0297 (1 HSPs)
scaffold0297 (14-48)||(17798-17832)
[»] scaffold0185 (1 HSPs)
scaffold0185 (14-48)||(10125-10159)
[»] scaffold0176 (1 HSPs)
scaffold0176 (11-49)||(9993-10031)
[»] scaffold0073 (1 HSPs)
scaffold0073 (14-48)||(59285-59319)
[»] scaffold0203 (1 HSPs)
scaffold0203 (11-48)||(23386-23423)
[»] scaffold0026 (1 HSPs)
scaffold0026 (11-48)||(8685-8721)
[»] scaffold1002 (1 HSPs)
scaffold1002 (11-43)||(3175-3207)
[»] scaffold0080 (1 HSPs)
scaffold0080 (14-46)||(122-154)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-54)||(143909-143941)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 114 - 370
Target Start/End: Complemental strand, 23351999 - 23351744
Alignment:
Q  114 aagaaattatataaggacagtcagaagcaactagcaatgtatcagaagcagcaaaaataaaataacagttcatcagaagctagcgtaagacataataata 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23351999 aagaaattatataaggacagtcagaagcaactagcaatgtatcagaagcagcaaaaataaaataacagttcatcagaagctagcgtaagacataataa-a 23351901  T
Q  214 annnnnnnatgaaaaacaagatagcgtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcatatttgtcatatcttttga 313  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23351900 tttttttgatgaaaaacaagatagcgtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcatatttgtcatatcttttga 23351801  T
Q  314 ttgcttctgtatagcttccttcagctcattgtaaccactggcttgagcttcatctct 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23351800 ttgcttctgtatagcttccttcagctcattgtaaccactggcttgagcttcttctct 23351744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 23352405 - 23352286
Alignment:
Q  3 aatactatatctactccctcttttgtcatcaacaaaaagtataaaatgaagatcgaaacgtggaagtaagaaaaacatgagaaaattctaagcaacatca 102  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23352405 aatactatatctattcccccttttgtcatcaacaaaaagtataaaatgaagatcgaaacatggaagtaagaaaaacatgagaaaattctaagcaacatca 23352306  T
Q  103 atcaaggtaaaaagaaatta 122  Q
    ||||||||||||||||||||    
T  23352305 atcaaggtaaaaagaaatta 23352286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 3597713 - 3597670
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  3597713 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 3597670  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 15780033 - 15779999
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  15780033 tactccctcttttgtcatcaacaaaaagaataaaa 15779999  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 15790622 - 15790588
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  15790622 tactccctcttttgtcatcaacaaaaagaataaaa 15790588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 22663952 - 22663990
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaat 49  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  22663952 atctactcccccttttatcatcaacaaaaagtataaaat 22663990  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 19927846 - 19927883
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  19927846 atctactcccccttttgtcatcaacaaaaagaataaaa 19927883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 20381735 - 20381698
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  20381735 atctactcccccttttgtcatcaacaaaatgtataaaa 20381698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 24647095 - 24647132
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  24647095 atctactcccccttttgtcatcaacgaaaagtataaaa 24647132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 18773414 - 18773454
Alignment:
Q  3 aatactatatctactccctcttttgtcatcaacaaaaagta 43  Q
    ||||||| ||||||||||  |||||||||||||||||||||    
T  18773414 aatactacatctactccccattttgtcatcaacaaaaagta 18773454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 19225879 - 19225911
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  19225879 atctactcccccttttgtcatcaacaaaaagta 19225911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 19419346 - 19419378
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  19419346 atctactcccccttttgtcatcaacaaaaagta 19419378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 30324586 - 30324554
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  30324586 atctactcccccttttgtcatcaacaaaaagta 30324554  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 370
Target Start/End: Original strand, 14008597 - 14008744
Alignment:
Q  223 tgaaaaacaagatagcgtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcatatttgtcatatcttttgattgcttctg 322  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||     
T  14008597 tgaaaaacaagataatgtgtgcaatctatggcttgacttgtttcttcatcatctccatcatctctctcatcatattagtcatatcctctgattgcttcta 14008696  T
Q  323 tatagcttccttcagctcattgtaaccactggcttgagcttcatctct 370  Q
     || |||||||| |||||||||||||  || ||||||| ||| |||||    
T  14008697 cattgcttcctttagctcattgtaacttctagcttgagtttcttctct 14008744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 14131064 - 14131010
Alignment:
Q  241 gtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcat 295  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14131064 gtgcaatctaaggtttggcttgattcttcatcatttccatcatctctctcatcat 14131010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 15834299 - 15834336
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15834299 atctactcccccttttgtcatcaacaaaaagtataaaa 15834336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 22141553 - 22141590
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  22141553 atctactcccccttttgtcatcaacaaaaagtataaaa 22141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 18140882 - 18140839
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||    
T  18140882 atctactcccccttttgtcatcaacaaatagtataaaataaaga 18140839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 13120775 - 13120809
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  13120775 tactcccccttttgtcatcaacaaaaagtataaaa 13120809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 12962454 - 12962417
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  12962454 atctactcccccttttatcatcaacaaaaagtataaaa 12962417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 14008383 - 14008428
Alignment:
Q  3 aatactatatctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||| ||||| ||||||| |||||||||||||||||||||| ||||    
T  14008383 aataatatatgtactcccccttttgtcatcaacaaaaagtaaaaaa 14008428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 7803787 - 7803755
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  7803787 atctactcccccttttgtcatcaacaaaaagta 7803755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 14131297 - 14131245
Alignment:
Q  3 aatactatatctactccctcttttgtcatcaacaaaaag-tataaaatgaaga 54  Q
    |||| ||||||||||||| |||||||||| ||||||||| || ||||||||||    
T  14131297 aatattatatctactcccccttttgtcattaacaaaaagttaaaaaatgaaga 14131245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 17909284 - 17909252
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  17909284 atctactcccccttttgtcatcaacaaaaagta 17909252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 799 - 683
Alignment:
Q  239 gtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcatatttgtcatatcttttgattgcttctgtatagcttccttcagc 338  Q
    ||||||||||||  | |||||||||||||||||||| |||||||| |||  ||||||||| ||||| | || |||||||||||| ||  ||||||| |||    
T  799 gtgtgcaatctattgtttggcttgtttcttcatcatctccatcatatcttgcatcatattggtcatcttttctgattgcttctgcatttcttcctttagc 700  T
Q  339 tcattgtaaccactggc 355  Q
    ||||||||||| |||||    
T  699 tcattgtaacctctggc 683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 1025 - 987
Alignment:
Q  4 atactatatctactccctcttttgtcatcaacaaaaagt 42  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  1025 atactatatctactcccccttttttcatcaacaaaaagt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 14303547 - 14303432
Alignment:
Q  255 ttggcttgtttcttcatcatttccatcatctctctcatcatatttgtcatatcttttgattgcttctgtatagcttccttcagctcattgtaaccactgg 354  Q
    |||||||||||||||||||| |||||||| || ||||||| |||| |||||   | |||||||||||| ||||||||||| ||||||||||||||  | |    
T  14303547 ttggcttgtttcttcatcatctccatcatttcactcatcaaatttatcatagtctctgattgcttctgcatagcttccttaagctcattgtaacccttag 14303448  T
Q  355 cttgagcttcatctct 370  Q
    || ||||||| |||||    
T  14303447 ctcgagcttcttctct 14303432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 14303792 - 14303740
Alignment:
Q  2 taatactatatctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  14303792 taatactatatctacgcccccttttgtcatcaacaaaaagtataaaataaaga 14303740  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 13031441 - 13031404
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13031441 atctactccctcttttgtcatcaacaaaaagtataaaa 13031404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 9709218 - 9709176
Alignment:
Q  13 ctactccctcttttgtcatcaacaaaaagtataaaatgaagat 55  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  9709218 ctactcccccttttgtcatcaacaaaaagtataaaataaagat 9709176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 332453 - 332490
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  332453 atctactcccccttttgtcatcaacaaaaagtataaaa 332490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 22577376 - 22577339
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  22577376 atctactcccccttttgtcatcaacaaaaagtataaaa 22577339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 14427316 - 14427359
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||    
T  14427316 atctactcccccttttgtcatgaacaaaaagtataaaataaaga 14427359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 21696156 - 21696190
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  21696156 tactcccccttttgtcatcaacaaaaagtataaaa 21696190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 4428405 - 4428368
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  4428405 atctactccccattttgtcatcaacaaaaagtataaaa 4428368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 4822234 - 4822271
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  4822234 atctactcccccttttgtcatcaacaaaaactataaaa 4822271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 13649544 - 13649581
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||  |||||||||||||||||||||||||||    
T  13649544 atctactccgccttttgtcatcaacaaaaagtataaaa 13649581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 16315934 - 16315897
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  16315934 atctcctcccccttttgtcatcaacaaaaagtataaaa 16315897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 9160698 - 9160730
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  9160698 atctactcccccttttgtcatcaacaaaaagta 9160730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 13259982 - 13259946
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaa 47  Q
    |||||||||| |||||||||||||||||||| |||||    
T  13259982 atctactcccccttttgtcatcaacaaaaagaataaa 13259946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 15887615 - 15887583
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  15887615 atctactcccccttttgtcatcaacaaaaagta 15887583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 20910459 - 20910590
Alignment:
Q  239 gtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcatatttgtcatatcttttgattgcttctgtatagcttccttcagc 338  Q
    |||||||||||| || ||| |||||||||||||||| |||||||||||  |||||||||| || ||   || ||| || ||||| || |||||||| |||    
T  20910459 gtgtgcaatctatggtttgacttgtttcttcatcatctccatcatctcagtcatcatattagttatggtttctgactgtttctgcatggcttccttaagc 20910558  T
Q  339 tcattgtaaccactggcttgagcttcatctct 370  Q
    ||||| || ||  | |||||||||||||||||    
T  20910559 tcattatatcccttagcttgagcttcatctct 20910590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 36134932 - 36134975
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  36134932 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 36134975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 18516520 - 18516479
Alignment:
Q  8 tatatctactccctcttttgtcatcaacaaaaagtataaaat 49  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  18516520 tatatctacttccccttttgtcatcaacaaaaagtataaaat 18516479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 20910228 - 20910271
Alignment:
Q  2 taatactatatctactccctcttttgtcatcaacaaaaagtata 45  Q
    ||||||| |||||||||||  |||||||||||||||||||||||    
T  20910228 taatactgtatctactccccattttgtcatcaacaaaaagtata 20910271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 20883139 - 20883105
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  20883139 tactcccccttttgtcatcaacaaaaagtataaaa 20883105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 22643716 - 22643750
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  22643716 tactcccccttttgtcatcaacaaaaagtataaaa 22643750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 23067767 - 23067801
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  23067767 tactcccccttttgtcatcaacaaaaagtataaaa 23067801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 29216501 - 29216531
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaag 41  Q
    |||||||||||||||||||||||||||||||    
T  29216501 atctactccctcttttgtcatcaacaaaaag 29216531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 19718314 - 19718351
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  19718314 atctactccccattttgtcatcaacaaaaagtataaaa 19718351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 7680154 - 7680186
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  7680154 atctactcccccttttgtcatcaacaaaaagta 7680186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 20953730 - 20953698
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  20953730 atctactcccccttttgtcatcaacaaaaagta 20953698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1948 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1948
Description:

Target: scaffold1948; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 235 - 278
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  235 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1260 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1260
Description:

Target: scaffold1260; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 2120 - 2077
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  2120 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 2077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 6437 - 6394
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  6437 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 6394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 134694 - 134651
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  134694 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 134651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 22802925 - 22802968
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  22802925 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 22802968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 20112052 - 20112015
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20112052 atctactcccccttttgtcatcaacaaaaagtataaaa 20112015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 21625909 - 21625949
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  21625909 tactcccccttttgtcatcaacaaaaagtataaaataaaga 21625949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 21235734 - 21235777
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    ||||||| || |||||||||||||||||||||||||||| ||||    
T  21235734 atctactaccccttttgtcatcaacaaaaagtataaaataaaga 21235777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 17782051 - 17782085
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  17782051 tactcccccttttgtcatcaacaaaaagtataaaa 17782085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 27373692 - 27373726
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  27373692 tactccctcttttgtcatcaacaaaaagaataaaa 27373726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 27464045 - 27464079
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  27464045 tactccctcttttgtcatcaacaaaaagaataaaa 27464079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 12359039 - 12359071
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  12359039 atctactcccccttttgtcatcaacaaaaagta 12359071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 19483589 - 19483629
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    ||||||| ||||||||||||||||||||| |||||| ||||    
T  19483589 tactcccccttttgtcatcaacaaaaagtttaaaataaaga 19483629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 20059780 - 20059748
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  20059780 atctactcccccttttgtcatcaacaaaaagta 20059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 25604362 - 25604418
Alignment:
Q  239 gtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcat 295  Q
    ||||||| | || ||||||||||||||||||||||  |||||||| || ||||||||    
T  25604362 gtgtgcattatatggcttggcttgtttcttcatcaaatccatcatttcactcatcat 25604418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 25612700 - 25612756
Alignment:
Q  239 gtgtgcaatctaaggcttggcttgtttcttcatcatttccatcatctctctcatcat 295  Q
    ||||||| | || ||||||||||||||||||||||  |||||||| || ||||||||    
T  25612700 gtgtgcattatatggcttggcttgtttcttcatcaaatccatcatttcactcatcat 25612756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 30743813 - 30743856
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  30743813 atctactcccccttttgtcatcaacaaaaagtataaaataaaga 30743856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 20797077 - 20797037
Alignment:
Q  3 aatactatatctactccctcttttgtcatcaacaaaaagta 43  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  20797077 aatactacatctactcccccttttgtcatcaacaaaaagta 20797037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 88791 - 88754
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  88791 atctactcccccttttgtcatccacaaaaagtataaaa 88754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 1110046 - 1110078
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  1110046 atctactcccccttttgtcatcaacaaaaagta 1110078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 20561686 - 20561654
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  20561686 atctactcccccttttgtcatcaacaaaaagta 20561654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 23405817 - 23405785
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  23405817 atctactcccccttttgtcatcaacaaaaagta 23405785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 24927041 - 24927073
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  24927041 atctactcccccttttgtcatcaacaaaaagta 24927073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 7726 - 7764
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaat 49  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  7726 atctactcccccttttgtcatcaacaaaaagtataaaat 7764  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 13575485 - 13575443
Alignment:
Q  13 ctactccctcttttgtcatcaacaaaaagtataaaatgaagat 55  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  13575485 ctactcccccttttgtcatcaacaaaaagtataaaataaagat 13575443  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 18776759 - 18776800
Alignment:
Q  8 tatatctactccctcttttgtcatcaacaaaaagtataaaat 49  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  18776759 tatatctactctcccttttgtcatcaacaaaaagtataaaat 18776800  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 14356583 - 14356539
Alignment:
Q  5 tactatatctactccctcttttgtcatcaacaaaaagtataaaat 49  Q
    |||||| |||||||||  |||||||||||||||||||||||||||    
T  14356583 tactatgtctactccccattttgtcatcaacaaaaagtataaaat 14356539  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 15140028 - 15140070
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  15140028 atctactccc-cttttgtcatcaacaaaaagtataaaataaaga 15140070  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 19887698 - 19887659
Alignment:
Q  4 atactatatctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  19887698 atactatatctactcccctttttgtcatcaacaaaaagta 19887659  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 19620405 - 19620368
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||| | |||||||||||||||||||||||||||    
T  19620405 atctactctcccttttgtcatcaacaaaaagtataaaa 19620368  T

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Target: scaffold0207 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 21451 - 21488
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21451 atctactcccccttttgtcatcaacaaaaagtataaaa 21488  T

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Target: scaffold0315 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 18720 - 18755
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataa 46  Q
    |||||||||| |||||||||||||||||||||||||    
T  18720 atctactcccccttttgtcatcaacaaaaagtataa 18755  T

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Target: scaffold0056 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 34112 - 34077
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataa 46  Q
    |||||||||| |||||||||||||||||||||||||    
T  34112 atctactcccccttttgtcatcaacaaaaagtataa 34077  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 4929 - 4886
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||  |||||||||||||||||||||||||||| ||||    
T  4929 atctactcctccttttgtcatcaacaaaaagtataaaataaaga 4886  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 30177 - 30134
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||    
T  30177 atctactcccccttttgtcatcaacaaaaaatataaaataaaga 30134  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 22454289 - 22454254
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataa 46  Q
    |||||||||| |||||||||||||||||||||||||    
T  22454289 atctactcccccttttgtcatcaacaaaaagtataa 22454254  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 18937348 - 18937385
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  18937348 atctactcccccttttgtcatcaataaaaagtataaaa 18937385  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 22318415 - 22318456
Alignment:
Q  13 ctactccctcttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  22318415 ctactcccccttttgtcatcaacaaaaaatataaaataaaga 22318456  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 21171711 - 21171679
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  21171711 atctactcccccttttgtcatcaacaaaaagta 21171679  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 28731174 - 28731142
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  28731174 atctactcccccttttgtcatcaacaaaaagta 28731142  T

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Target: scaffold0297 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 17798 - 17832
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  17798 tactcccacttttgtcatcaacaaaaagtataaaa 17832  T

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Target: scaffold0185 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 10125 - 10159
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  10125 tactcccccttttgtcatcaacaaaaagtataaaa 10159  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 9993 - 10031
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaat 49  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  9993 atctacttccccttttgtcatcaacaaaaagtataaaat 10031  T

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Target: scaffold0073 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 59285 - 59319
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    ||||||| |||||||||||||||||||||||||||    
T  59285 tactcccccttttgtcatcaacaaaaagtataaaa 59319  T

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Target: scaffold0203 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 23423 - 23386
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  23423 atctactcccccttttgtcatcaacaaaaagtaaaaaa 23386  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 8685 - 8721
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagtataaaa 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8685 atctactccc-cttttgtcatcaacaaaaagtataaaa 8721  T

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Target: scaffold1002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 3207 - 3175
Alignment:
Q  11 atctactccctcttttgtcatcaacaaaaagta 43  Q
    |||||||||| ||||||||||||||||||||||    
T  3207 atctactcccccttttgtcatcaacaaaaagta 3175  T

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Target: scaffold0080 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 122 - 154
Alignment:
Q  14 tactccctcttttgtcatcaacaaaaagtataa 46  Q
    ||||||| |||||||||||||||||||||||||    
T  122 tactcccccttttgtcatcaacaaaaagtataa 154  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 143909 - 143941
Alignment:
Q  22 cttttgtcatcaacaaaaagtataaaatgaaga 54  Q
    |||||||||||||||||||||||||||| ||||    
T  143909 cttttgtcatcaacaaaaagtataaaataaaga 143941  T

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