View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3811_high_2 (Length: 345)
Name: NF3811_high_2
Description: NF3811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3811_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 45217450 - 45217771
Alignment:
| Q |
16 |
aaaaacacttagagtttgagggacaaatcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattataacctccaaatacattttgcacct |
115 |
Q |
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| T |
45217450 |
aaaaacacttagagtttgagggacaagtcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattataacctccaaatccattttgcacct |
45217549 |
T |
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| Q |
116 |
ttcttggagaaaatttccctgatcttgtaggtatggcactagtcaaggatgatgatccatcagtttctgcctcaacatgaagattccttgatgctggttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217550 |
ttcttggagaaaatttccctgatcttgtaggtatggcactagtcaaggatgatgatccatcagtttctgcctcaacatgaagattccttgatgctggttg |
45217649 |
T |
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| Q |
216 |
tgaatatataggcagcttctgccactggtttggaccacagtaacgtgacaaaccgaaaaacggtgtttgataagaaggtttttgaatcatagaagagtgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217650 |
tgaatatataggcagcttctgccactggtttggaccacagtaacgtgacaaaccgaaaaacggtgtttgataagaaggtttttgaatcatagaagagtgc |
45217749 |
T |
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| Q |
316 |
acctgaattccaagtgatgatg |
337 |
Q |
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|||||||||||||||||||||| |
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| T |
45217750 |
acctgaattccaagtgatgatg |
45217771 |
T |
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