View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3811_low_2 (Length: 379)
Name: NF3811_low_2
Description: NF3811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3811_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 28 - 363
Target Start/End: Original strand, 48870125 - 48870473
Alignment:
| Q |
28 |
atccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattg |
127 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48870125 |
atccttcctttttctagttggcttttcattttgatcagaatttcttgtcacagctgaatctattacatttccactatcaaaattaggcacatcatgattg |
48870224 |
T |
|
| Q |
128 |
cttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48870225 |
cttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgat |
48870324 |
T |
|
| Q |
228 |
caattcctttcatcaccatccttggatcatcatttgcagaaaacactga-------------aatcaaaacactataattttttataaatgtatcagtaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48870325 |
caattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaatcaaaaactgtaatcaaaacactataattttttataaatgtatcagtaa |
48870424 |
T |
|
| Q |
315 |
cataagattggagaattgcataacttacctatgacaggtaggtccatct |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48870425 |
cataagattggagaattgcataacttacctatgacaggtaggtccatct |
48870473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 283
Target Start/End: Complemental strand, 2905060 - 2904806
Alignment:
| Q |
29 |
tccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattgc |
128 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||| |||| |||||||| ||||| |||||| |
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| T |
2905060 |
tccttcctttttctagatggcttttcattttgatcgaaatttcctgtccgagctgaatcgattccatttccacaatcagaattaggcgcatcacgattgc |
2904961 |
T |
|
| Q |
129 |
ttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgatc |
228 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2904960 |
ttcttttgttagttttcttcttcctgactacatgttgccaaatcatttgtacctccttcaatgtaacaggtttcagcagataatcacaagcaccatgatc |
2904861 |
T |
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| Q |
229 |
aattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaatcaaa |
283 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2904860 |
aattcctttcatcaccatctttggatcatcatttgcagaaaacactgaaatcaaa |
2904806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 2888964 - 2888709
Alignment:
| Q |
28 |
atccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattg |
127 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||| | ||||||||||||||| ||||||| | || |||||| |
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| T |
2888964 |
atccttcctttttctagatggcttttcaatttgatcagaatttccagtcccagccgaatctttcccatttccactatcagaattaggtgcgtcgtgattg |
2888865 |
T |
|
| Q |
128 |
cttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgat |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||||| | |
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| T |
2888864 |
cttcttttgctagttttcttcttcctgattacatgctgccaaatgatctgtacctctttcagtctaacaggtttcaccagataatcacaagcaccatgtt |
2888765 |
T |
|
| Q |
228 |
caattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaatcaaa |
283 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2888764 |
caattcctttcatcaccatctttggatcatcatttgcagaaaacactgaaatcaaa |
2888709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 2893552 - 2893297
Alignment:
| Q |
28 |
atccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattg |
127 |
Q |
| |
|
||||||||||||||||| || | |||||| || ||||||||||| |||| | || |||||| | ||||||||||||||| |||| ||| | ||||||||| |
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|
| T |
2893552 |
atccttcctttttctagatgccctttcatttttatcagaatttcctgtccccgccgaatctttcccatttccactatcagaattgggcgcgtcatgattg |
2893453 |
T |
|
| Q |
128 |
cttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgat |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||| || | |
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| T |
2893452 |
cttcttttgctagttttcttcttcctgattacatgctgccaaatgatctgtacctctttcagtctaacaggtttcagcagataatcacaagcaccgtgtt |
2893353 |
T |
|
| Q |
228 |
caattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaatcaaa |
283 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
2893352 |
caattcctttcatcaccatcttcggatcatcattcgcagaaaacactgaaatcaaa |
2893297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 2904783 - 2904709
Alignment:
| Q |
289 |
ataattttttataaatgtatcagtaacataagattggagaattgcataacttacctatgacaggtaggtccatct |
363 |
Q |
| |
|
|||||||| ||| ||| |||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||| |
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| T |
2904783 |
ataattttctatgcatggatcaataacataagattgaagaatttcataacttactgatgacaggtaggtccatct |
2904709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 2888653 - 2888606
Alignment:
| Q |
316 |
ataagattggagaattgcataacttacctatgacaggtaggtccatct |
363 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
2888653 |
ataagattgaagaattgcataacttacttatgacaggtaaatccatct |
2888606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 49060906 - 49061046
Alignment:
| Q |
143 |
ttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgatcaattcctttcatca |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| || ||| | ||| | ||||||||||| ||||||||||| |||||||| |||||||||||||| |
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|
| T |
49060906 |
ttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttcatca |
49061005 |
T |
|
| Q |
243 |
ccatccttggatcatcatttgcagaaaacactgaaatcaaa |
283 |
Q |
| |
|
||| | ||| |||| ||| |||||| ||||||||||||||| |
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|
| T |
49061006 |
ccagctttgtatcaccatatgcagacaacactgaaatcaaa |
49061046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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