View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3811_low_5 (Length: 238)
Name: NF3811_low_5
Description: NF3811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3811_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 23391889 - 23391772
Alignment:
| Q |
104 |
ctgtttacttaatttttccttcaaactatgcttccttataaatataccacctttctcttggttttcttaaatctcaacaccaaaatttcaacctctttac |
203 |
Q |
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| T |
23391889 |
ctgtttacttcatttttccttcaaactatgcttccttataaatataccacctttctcttggttttcttaaatctcaacaccaaaatttcaacctctttac |
23391790 |
T |
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| Q |
204 |
tctataacaaactcttat |
221 |
Q |
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| T |
23391789 |
tctataacaaactcttat |
23391772 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 23392012 - 23391957
Alignment:
| Q |
10 |
catcatcagtttccctttttctttcaaaataattcataaccaatcctctatatccaa |
66 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23392012 |
catcatcagtt-ccctttttctttcaaaataattcataaccaatcctctatagccaa |
23391957 |
T |
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