View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_1 (Length: 714)
Name: NF3812_high_1
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_1 |
 | |
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| [»] scaffold0009 (3 HSPs) |
| | |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Original strand, 47650065 - 47650755
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaaggagatttgatattttatattttaccgcatcatagctaacggcttgaaatgacttccttccacatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650065 |
agttatcaagtcaatgacaaatataccaacaaaaggagatttgatattttatattttaccgcatcatagctaacggcttgaaatgacttccttccacatc |
47650164 |
T |
|
| Q |
101 |
tatgatttataacttgtttagatttatttgatttgttcctgttactaatttcctgtaaataatacaagtagaaatatcgtatatgtttacgtataaaatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47650165 |
tatgatttataacttgtttagatttatttgatttgttcctgtaactaatttcctgtaaataatacaagtagaaatatagtatatgtttacgtataaaatt |
47650264 |
T |
|
| Q |
201 |
aaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctaccaagtacttccaatcttcgtcacttaaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650265 |
aaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctaccaagtacttccaatcttcgtcacttaaat |
47650364 |
T |
|
| Q |
301 |
catctggtttatgttccaaggctatctcatttgtcttgtattggctaaagtgtttacgaaatctacatctatgatttcgatatagtcttttagcaatatc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47650365 |
catctggtttatgttccaaggctatctcatttgtcttgtattggctaaagtgtttacgaaatctacatctatgatttcgatatagtcttttagcagtatc |
47650464 |
T |
|
| Q |
401 |
aataataacatctctgttatgctttgtattatcaatatcaaaagtatcctgctctcaacagttaaaatgaaaactatagtgagtgctctgtaaaagcaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
47650465 |
aataataacatctctgttatgctttgtattatcaatatcaaaagtatcctgctctcaacagttaaaatgaaaactatagtgagtactctgtaaaagcaat |
47650564 |
T |
|
| Q |
501 |
caaataaaattaaaaggcacaagattatgatttaccaaaacttttgatactatcttgttttctgtctcttgtggaatttttctccatttcttgacattaa |
600 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47650565 |
caaataaaattaaaaggcacaagattatgatttaccaaaacttttgatactatcttgttttctgtctcttgtggaatttttctccatttcttgacattaa |
47650664 |
T |
|
| Q |
601 |
aaggtgcattttttaagacaacaatagagatctcagtcacaaaattagcagctcctgatccaacagctaccattttatctgttggaataac |
691 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47650665 |
aaggtgcattttttaagacaacgatagagatctcagtcacaaaattagcagctcctgatccaacagctaccattttatctgtcggaataac |
47650755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 172 - 533
Target Start/End: Complemental strand, 170641 - 170283
Alignment:
| Q |
172 |
aaatatcgtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctac |
271 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
170641 |
aaatatagtagatgtttacgtatagaattaaattgcctatatttatatagtaaatataatacaaacatacattgaattcaggacttgaaaaataatctac |
170542 |
T |
|
| Q |
272 |
caagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaggctatctcatttgtcttgtattggctaaagtgtttacgaaatctacatcta |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
170541 |
caagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaagctatctcatttgtcttgtattggctaaagtgtttatgaaatctacatcta |
170442 |
T |
|
| Q |
372 |
tgatttcgatatagtcttttagcaatatcaataataacatctctgttatgctttgtattatcaatatcaaaagtatcctgctctcaacagttaaaatgaa |
471 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
170441 |
tgatttcgatatagtcttttagcagtatcaataataacatctctgttatgctttgtattatcaatatcaaaagtatcctgcactcaacaattaaaatgaa |
170342 |
T |
|
| Q |
472 |
aactatagtgagtgctctgtaaaagcaatcaaataaaattaaaaggcacaagattatgattt |
533 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
170341 |
aactataatgag---tatgtaaaagcaatcaaataaaataaaaaggcacaagattatgattt |
170283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 608 - 691
Target Start/End: Complemental strand, 170286 - 170203
Alignment:
| Q |
608 |
attttttaagacaacaatagagatctcagtcacaaaattagcagctcctgatccaacagctaccattttatctgttggaataac |
691 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
170286 |
attttttaggacaacagtagagatctcagtcacaaaattagcagctcctgatccaacagctaccattttatctgtcggaataac |
170203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 170758 - 170660
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaa-ggagatttgatattttatattttaccgcatcatagctaacggcttgaaatgacttccttccaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
170758 |
agttatcaagtcaatgacaaatatactaggaaaaaggagatttgatattatatattttaccgcgtcatagctaacagcttgaaatgacttccttccaca |
170660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 611 - 691
Target Start/End: Original strand, 92272 - 92352
Alignment:
| Q |
611 |
ttttaagacaacaatagagatctcagtcacaaaattagcagctcctgatccaacagctaccattttatctgttggaataac |
691 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
92272 |
ttttaggacaacaatagagacctcagtcacaaaattagcagctcctgatccaacagctaccattttatctgtcggaataac |
92352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 92224 - 92276
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaa--ggagatttgatatttta |
51 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
92224 |
agttatcaagtcaatgataaatataccaaaaaaaagggagatttgatatttta |
92276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 492 - 653
Target Start/End: Original strand, 37332931 - 37333096
Alignment:
| Q |
492 |
aaaagcaatcaaataaaattaaaaggcacaagattatgatttaccaaaacttttgatactatcttgttttctgtctcttgtggaatttttctccatttct |
591 |
Q |
| |
|
||||||||| ||||| ||| |||| |||||||||| ||||| |||||||||| |||||||||||| |||| || ||| ||||||||||||||||||| |
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| T |
37332931 |
aaaagcaatgaaatagaataaaaaaacacaagattacaatttatcaaaacttttaatactatcttgtattcttccttttgaggaatttttctccatttct |
37333030 |
T |
|
| Q |
592 |
tgacattaaaaggtgcattttttaagacaac----aatagagatctcagtcacaaaattagcagct |
653 |
Q |
| |
|
|||||||||| |||||||||| || ||||| ||||||||||||| |||||||||| |||||| |
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|
| T |
37333031 |
tgacattaaacggtgcattttgtaggacaatgtataatagagatctcaatcacaaaatttgcagct |
37333096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 37332844 - 37332920
Alignment:
| Q |
101 |
tatgatttataacttgtttagatttatttgatttgttcctgttactaatttcctgtaaataatacaagtagaaatat |
177 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||| | |||||| |||||||||||||||| ||||||||| |
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|
| T |
37332844 |
tatgattaataacttgttttgctttatttgatttgttcctttcgctaattgcctgtaaataatacaaatagaaatat |
37332920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30754200 - 30754353
Alignment:
| Q |
1 |
agttatcaagtcaatgacaaatataccaacaaaag-gagatttgatatttt---atattttaccgcatcatagctaacggcttgaaatgacttccttcca |
96 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| ||||| |||||| ||||||||||| |||||||| | ||||||||| |
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|
| T |
30754200 |
agttatcaagtcaatgataaatataccaaaaaaagagagattttatatttttttatattataccgcgtcatagctaacaacttgaaataaattccttcca |
30754299 |
T |
|
| Q |
97 |
catctatgatttataacttgtttagatttatttgatttgttcctgttactaatt |
150 |
Q |
| |
|
| |||| ||| |||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
30754300 |
cgtctacaattaataacttgtttagacttatttaatttgttccttttactaatt |
30754353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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