View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3812_high_10 (Length: 306)
Name: NF3812_high_10
Description: NF3812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3812_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 36954851 - 36954732
Alignment:
| Q |
31 |
tacttacttcctcagtctcaaattgaatgacctaattatggtcgaaatatgttatgtgaatactccaaaaagttaaactaaactaggagaggagatgata |
130 |
Q |
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| T |
36954851 |
tacttacttcctcagtctcaaattgaatgacctaattatggtcgaaatatgttatgtgaatactccaaaaagttaaactaaactaggagaggagatg--a |
36954754 |
T |
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| Q |
131 |
tagtgatgcgtttggctggatg |
152 |
Q |
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| T |
36954753 |
tagtgatgcgtttggctggatg |
36954732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 36954679 - 36954596
Alignment:
| Q |
165 |
ggggattatccttattattgtcatgaaaacatgatgaactggaattgcttgacattaagatccaatccaagtattatgtaattt |
248 |
Q |
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| T |
36954679 |
ggggattatccttattattgtcatgaaaacatgatgaactggaattgcttgacattaagatccaatccaagtattatgtaattt |
36954596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36954897 - 36954859
Alignment:
| Q |
1 |
gcgtcgttgaacacagaagaggtacgttactacttactt |
39 |
Q |
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| T |
36954897 |
gcgtcgttgaacacagaagaggtgcgttactacttactt |
36954859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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